Variant report

Variant	rs62263759
Chromosome Location	chr3:112693753-112693754
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112357856..112364091-chr3:112692717..112699765,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2029315	0.82[ASN][1000 genomes]
rs61629858	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62263730	0.82[ASN][1000 genomes]
rs6780406	0.82[ASN][1000 genomes]
rs6805959	0.82[ASN][1000 genomes]
rs7432373	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112690400-112693800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:112691000-112694200	Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr3:112691000-112694400	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr3:112691400-112694000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:112691400-112694000	Active TSS	Duodenum Mucosa	Duodenum
6	chr3:112691400-112694200	Active TSS	Primary T cells fromperipheralblood	blood
7	chr3:112691600-112694600	Flanking Active TSS	GM12878-XiMat	blood
8	chr3:112692200-112694000	Active TSS	Colonic Mucosa	Colon
9	chr3:112692200-112694000	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr3:112692200-112694000	Active TSS	Rectal Smooth Muscle	rectum
11	chr3:112692200-112694200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr3:112692200-112694400	Active TSS	Adipose Nuclei	Adipose
13	chr3:112692200-112695400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:112692400-112693800	Active TSS	Fetal Muscle Leg	muscle
15	chr3:112692400-112694000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:112692400-112694000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:112692400-112694000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr3:112692400-112694000	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr3:112692400-112694200	Active TSS	Rectal Mucosa Donor 31	rectum
20	chr3:112692600-112693800	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:112692600-112694000	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr3:112692800-112693800	Active TSS	Fetal Muscle Trunk	muscle
23	chr3:112692800-112694000	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr3:112692800-112694000	Active TSS	Placenta	Placenta
25	chr3:112692800-112694200	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr3:112692800-112695800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr3:112693000-112694000	Active TSS	Liver	Liver
28	chr3:112693000-112694000	Active TSS	Esophagus	oesophagus
29	chr3:112693000-112694800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr3:112693000-112694800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr3:112693200-112693800	Active TSS	Primary T cells from cord blood	blood
32	chr3:112693200-112694600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr3:112693400-112694000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr3:112693400-112694200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr3:112693400-112694200	Active TSS	Fetal Thymus	thymus
36	chr3:112693400-112694400	Active TSS	Right Atrium	heart
37	chr3:112693600-112694200	Flanking Active TSS	Thymus	Thymus
38	chr3:112693600-112694400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:112693600-112694400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:112693600-112694600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:112693600-112695200	Enhancers	NHEK	skin

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