Variant report

Variant	rs61637657
Chromosome Location	chr4:143113574-143113575
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143110474..143112646-chr4:143112812..143114459,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10452237	0.89[AFR][1000 genomes]
rs11934541	0.91[AFR][1000 genomes]
rs11935366	0.90[AFR][1000 genomes]
rs1343813	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1497132	0.84[AFR][1000 genomes]
rs1497141	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17015737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850819	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672890	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830097	chr4:142949705-143136372	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143049800-143114400	Weak transcription	Right Ventricle	heart
2	chr4:143057800-143114400	Weak transcription	Aorta	Aorta
3	chr4:143058000-143181000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:143070400-143134400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:143071000-143117800	Weak transcription	Psoas Muscle	Psoas
6	chr4:143072000-143137000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:143081000-143128200	Weak transcription	NHDF-Ad	bronchial
8	chr4:143082000-143130000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:143082400-143134800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:143082800-143115800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:143089400-143118000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:143090000-143117400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:143092400-143116200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:143092400-143131000	Weak transcription	Fetal Intestine Large	intestine
15	chr4:143094800-143114000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:143095000-143115400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:143095000-143128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:143095000-143128200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:143095000-143154200	Weak transcription	Left Ventricle	heart
20	chr4:143097800-143114600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:143098400-143113800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:143098600-143116600	Weak transcription	Fetal Intestine Small	intestine
23	chr4:143102400-143125600	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:143102400-143128000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr4:143103800-143116000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:143104800-143115600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:143105600-143113800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:143109800-143118000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr4:143110200-143115000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:143110200-143118000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr4:143110200-143119200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:143110400-143114400	Strong transcription	Dnd41	blood
33	chr4:143111400-143115000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr4:143112000-143114000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:143112000-143114400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:143112000-143114600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:143112000-143116200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr4:143112200-143114400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:143112200-143114400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:143112200-143114600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:143112200-143114600	Strong transcription	HSMMtube	muscle
42	chr4:143112400-143114200	Genic enhancers	Muscle Satellite Cultured Cells	--
43	chr4:143112400-143114400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:143112400-143114600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:143112400-143115200	Strong transcription	HSMM	muscle
46	chr4:143112600-143113800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:143112600-143114200	Enhancers	Osteobl	bone
48	chr4:143112600-143137600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:143112800-143113600	Weak transcription	Primary T cells from cord blood	blood
50	chr4:143113000-143113600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links