Variant report

Variant	rs7672890
Chromosome Location	chr4:143144528-143144529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10452237	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11934541	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935366	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1343813	0.91[AFR][1000 genomes]
rs1497141	0.82[YRI][hapmap];0.90[AFR][1000 genomes]
rs17015737	0.89[AFR][1000 genomes]
rs56790487	1.00[AMR][1000 genomes]
rs61637657	0.90[AFR][1000 genomes]
rs73850817	0.91[AFR][1000 genomes]
rs73850819	0.86[AFR][1000 genomes]
rs73850820	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143058000-143181000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:143095000-143154200	Weak transcription	Left Ventricle	heart
3	chr4:143114600-143150600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:143128800-143157200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:143128800-143158600	Weak transcription	NHDF-Ad	bronchial
6	chr4:143129000-143153400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:143129000-143155200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:143129000-143157200	Weak transcription	Dnd41	blood
9	chr4:143129200-143147400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:143129200-143152200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:143129200-143155400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:143129200-143157200	Weak transcription	NHEK	skin
13	chr4:143129200-143169600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:143130200-143157200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:143131600-143152200	Weak transcription	HSMM	muscle
16	chr4:143133600-143157200	Weak transcription	HMEC	breast
17	chr4:143133800-143146200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:143135000-143150600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:143135400-143184200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:143135800-143146000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:143139000-143147200	Weak transcription	Primary T cells from cord blood	blood
22	chr4:143139400-143157200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:143139400-143159600	Weak transcription	HSMMtube	muscle
24	chr4:143141600-143148600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:143142000-143144800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:143142200-143159800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:143143400-143148600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:143143600-143159600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:143144000-143144800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:143144000-143147200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr4:143144000-143149600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr4:143144000-143159200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:143144200-143146800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:143144200-143150600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr4:143144400-143146000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:143144400-143146200	Weak transcription	A549	lung
37	chr4:143144400-143150200	Weak transcription	Right Ventricle	heart

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