Variant report

Variant	rs61641994
Chromosome Location	chr1:221017775-221017776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28782004	1.00[EUR][1000 genomes]
rs74140358	1.00[EUR][1000 genomes]
rs74140364	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7524572	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221013400-221018000	Weak transcription	Right Ventricle	heart
2	chr1:221015400-221018200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:221015600-221018200	Enhancers	Fetal Stomach	stomach
4	chr1:221015600-221018400	Enhancers	Fetal Heart	heart
5	chr1:221017200-221018000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr1:221017400-221017800	Weak transcription	Right Atrium	heart
7	chr1:221017400-221018200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:221017600-221018000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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