Variant report

Variant	rs61645687
Chromosome Location	chr6:147572157-147572158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147570692..147572642-chr6:147580577..147582832,2	MCF-7	breast:
2	chr6:147570173..147572962-chr6:147576488..147578515,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs73580488	1.00[AFR][1000 genomes]
rs73582506	1.00[AFR][1000 genomes]
rs73582513	1.00[AFR][1000 genomes]
rs73582518	1.00[AFR][1000 genomes]
rs73582522	1.00[AFR][1000 genomes]
rs73582523	1.00[AFR][1000 genomes]
rs73582531	1.00[AFR][1000 genomes]
rs73582532	1.00[AFR][1000 genomes]
rs73582537	1.00[AFR][1000 genomes]
rs73582601	1.00[AFR][1000 genomes]
rs73584513	1.00[AFR][1000 genomes]
rs73584514	1.00[AFR][1000 genomes]
rs73584535	1.00[AFR][1000 genomes]
rs73584536	1.00[AFR][1000 genomes]
rs73584537	1.00[AFR][1000 genomes]
rs73586317	1.00[AFR][1000 genomes]
rs73586354	1.00[AFR][1000 genomes]
rs73586356	1.00[AFR][1000 genomes]
rs73586357	1.00[AFR][1000 genomes]
rs73588331	0.87[AFR][1000 genomes]
rs73588335	1.00[AFR][1000 genomes]
rs73588338	1.00[AFR][1000 genomes]
rs73588355	1.00[AFR][1000 genomes]
rs73588367	1.00[AFR][1000 genomes]
rs73588385	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147526000-147572200	Weak transcription	Lung	lung
2	chr6:147527200-147572200	Weak transcription	Esophagus	oesophagus
3	chr6:147527400-147576400	Weak transcription	HSMMtube	muscle
4	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:147529000-147572200	Weak transcription	Aorta	Aorta
6	chr6:147533200-147572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:147534000-147572200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:147537600-147572200	Weak transcription	Ovary	ovary
9	chr6:147538200-147572200	Weak transcription	Spleen	Spleen
10	chr6:147538400-147572200	Weak transcription	Fetal Lung	lung
11	chr6:147538800-147572200	Weak transcription	Placenta	Placenta
12	chr6:147542400-147590800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:147543800-147572200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:147543800-147588800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:147544000-147572200	Weak transcription	GM12878-XiMat	blood
16	chr6:147544200-147574200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:147544400-147574800	Weak transcription	HepG2	liver
18	chr6:147545600-147617000	Weak transcription	Small Intestine	intestine
19	chr6:147549200-147572200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:147549400-147616800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:147549600-147572200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:147549600-147578200	Weak transcription	Fetal Heart	heart
23	chr6:147549600-147584600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:147549600-147587200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:147552600-147591800	Weak transcription	HUVEC	blood vessel
26	chr6:147554600-147590000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:147556200-147574600	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr6:147556400-147572200	Weak transcription	Brain Angular Gyrus	brain
29	chr6:147556400-147572200	Weak transcription	Gastric	stomach
30	chr6:147557200-147572200	Weak transcription	Brain Germinal Matrix	brain
31	chr6:147557600-147572200	Weak transcription	Colonic Mucosa	Colon
32	chr6:147558000-147572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:147559600-147572200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:147560200-147574200	Weak transcription	Dnd41	blood
35	chr6:147560600-147572200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr6:147561600-147600800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:147562600-147599800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:147562800-147572200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:147564000-147586800	Weak transcription	HMEC	breast
40	chr6:147564200-147572200	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:147564400-147572200	Weak transcription	NHDF-Ad	bronchial
42	chr6:147564400-147604600	Weak transcription	NHLF	lung
43	chr6:147564400-147619000	Weak transcription	Hela-S3	cervix
44	chr6:147564600-147572200	Weak transcription	Brain Anterior Caudate	brain
45	chr6:147564600-147608800	Weak transcription	NH-A	brain
46	chr6:147564600-147617000	Weak transcription	Fetal Kidney	kidney
47	chr6:147565600-147572600	Strong transcription	Osteobl	bone
48	chr6:147566200-147574000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:147566200-147574400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:147566400-147572200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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