Variant report

Variant	rs73588355
Chromosome Location	chr6:147708217-147708218
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:147707963-147708691	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr6:147708038-147711397	K562	blood:	n/a	n/a
3	GATA3	chr6:147707996-147708660	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000225135	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs61645687	1.00[AFR][1000 genomes]
rs73580488	1.00[AFR][1000 genomes]
rs73582506	1.00[AFR][1000 genomes]
rs73582513	1.00[AFR][1000 genomes]
rs73582518	1.00[AFR][1000 genomes]
rs73582522	1.00[AFR][1000 genomes]
rs73582523	1.00[AFR][1000 genomes]
rs73582531	1.00[AFR][1000 genomes]
rs73582532	1.00[AFR][1000 genomes]
rs73582537	1.00[AFR][1000 genomes]
rs73582601	1.00[AFR][1000 genomes]
rs73584513	1.00[AFR][1000 genomes]
rs73584514	1.00[AFR][1000 genomes]
rs73584535	1.00[AFR][1000 genomes]
rs73584536	1.00[AFR][1000 genomes]
rs73584537	1.00[AFR][1000 genomes]
rs73586317	1.00[AFR][1000 genomes]
rs73586354	1.00[AFR][1000 genomes]
rs73586356	1.00[AFR][1000 genomes]
rs73586357	1.00[AFR][1000 genomes]
rs73588331	0.87[AFR][1000 genomes]
rs73588335	1.00[AFR][1000 genomes]
rs73588338	1.00[AFR][1000 genomes]
rs73588367	1.00[AFR][1000 genomes]
rs73588385	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv886757	chr6:147591022-147729477	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv1016430	chr6:147662541-147711882	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147645200-147715000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:147649600-147711800	Weak transcription	Colonic Mucosa	Colon
3	chr6:147680400-147710600	Weak transcription	Pancreas	Pancrea
4	chr6:147680400-147721800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:147685600-147714200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:147687800-147724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:147688000-147710600	Weak transcription	A549	lung
8	chr6:147693200-147709600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:147694400-147709800	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr6:147694800-147711200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:147701200-147708400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:147704200-147709400	Strong transcription	NHDF-Ad	bronchial
13	chr6:147704200-147717600	Weak transcription	Fetal Stomach	stomach
14	chr6:147704600-147709200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:147705800-147710600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:147705800-147710800	Weak transcription	NH-A	brain
17	chr6:147706200-147710600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:147706200-147713000	Weak transcription	HepG2	liver
19	chr6:147706400-147709000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:147706400-147710600	Weak transcription	Primary B cells from cord blood	blood
21	chr6:147706400-147710600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:147706400-147710600	Weak transcription	NHLF	lung
23	chr6:147706400-147710800	Weak transcription	HSMMtube	muscle
24	chr6:147706400-147713200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:147706400-147715600	Weak transcription	Aorta	Aorta
26	chr6:147706400-147715600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:147706400-147715800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:147706400-147715800	Weak transcription	HMEC	breast
29	chr6:147706400-147716800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:147706600-147708400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:147706600-147708400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:147706600-147710600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:147706600-147710600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:147706600-147716000	Weak transcription	HSMM	muscle
35	chr6:147706800-147708400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:147706800-147708400	Weak transcription	Fetal Intestine Large	intestine
37	chr6:147706800-147708400	Weak transcription	Fetal Thymus	thymus
38	chr6:147706800-147710600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:147706800-147710600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:147706800-147710800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:147706800-147711000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:147706800-147712200	Weak transcription	Adipose Nuclei	Adipose
43	chr6:147706800-147712200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:147706800-147716800	Weak transcription	Fetal Kidney	kidney
45	chr6:147707000-147708800	Weak transcription	Osteobl	bone
46	chr6:147707000-147710200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:147707000-147710800	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr6:147707000-147711800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:147707000-147713600	Weak transcription	Primary T cells from cord blood	blood
50	chr6:147707200-147713400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links