Variant report

Variant	rs61655182
Chromosome Location	chr17:19844126-19844127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19840864..19845443-chr17:19846835..19853734,12	MCF-7	breast:
2	chr17:19769581..19771974-chr17:19843282..19846506,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108599	Chromatin interaction
ENSG00000083290	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12325682	0.90[AFR][1000 genomes]
rs12325689	0.82[AFR][1000 genomes]
rs59774597	0.90[AFR][1000 genomes]
rs60818106	0.83[AFR][1000 genomes]
rs61093861	1.00[AFR][1000 genomes]
rs61612850	0.95[AFR][1000 genomes]
rs61648246	0.90[AFR][1000 genomes]
rs73296034	0.95[AFR][1000 genomes]
rs73296042	0.90[AFR][1000 genomes]
rs73296051	0.88[AFR][1000 genomes]
rs73296074	0.90[AFR][1000 genomes]
rs73296078	0.85[AFR][1000 genomes]
rs73303979	0.81[AFR][1000 genomes]
rs73303985	1.00[AFR][1000 genomes]
rs9652900	0.85[AFR][1000 genomes]
rs9652901	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv907869	chr17:19795774-19926836	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833394	chr17:19827714-19999577	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19802800-19844400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:19802800-19846400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:19802800-19852400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr17:19803000-19851800	Strong transcription	Fetal Thymus	thymus
5	chr17:19803600-19845400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr17:19803600-19848000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:19804000-19844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr17:19804000-19853000	Strong transcription	Dnd41	blood
9	chr17:19806200-19844600	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr17:19806400-19846200	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr17:19812200-19845400	Strong transcription	Liver	Liver
12	chr17:19816800-19844400	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr17:19817800-19844200	Weak transcription	Stomach Mucosa	stomach
14	chr17:19819600-19844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr17:19824800-19844200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr17:19824800-19845800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr17:19825000-19845200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:19825200-19848400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:19825200-19851800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr17:19827600-19851600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr17:19827600-19852800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr17:19830600-19851200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:19831600-19851400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr17:19832000-19844200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr17:19832000-19845200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr17:19832000-19845400	Strong transcription	Duodenum Mucosa	Duodenum
27	chr17:19832200-19844400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr17:19836200-19845200	Strong transcription	Thymus	Thymus
29	chr17:19836600-19845200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr17:19837400-19844800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr17:19837600-19844800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr17:19837800-19846400	Strong transcription	Primary T cells from cord blood	blood
33	chr17:19838000-19844600	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:19838600-19851600	Weak transcription	Psoas Muscle	Psoas
35	chr17:19839800-19844200	Weak transcription	Fetal Heart	heart
36	chr17:19839800-19844200	Genic enhancers	A549	lung
37	chr17:19839800-19846000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr17:19839800-19849800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr17:19840000-19846200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr17:19840000-19846600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr17:19840000-19849400	Weak transcription	Colonic Mucosa	Colon
42	chr17:19840000-19851600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr17:19840000-19879200	Weak transcription	Fetal Brain Male	brain
44	chr17:19840200-19844800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr17:19840200-19845600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr17:19840200-19848200	Weak transcription	K562	blood
47	chr17:19840400-19844200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr17:19840400-19846600	Weak transcription	Brain Germinal Matrix	brain
49	chr17:19841200-19848200	Weak transcription	Fetal Brain Female	brain
50	chr17:19841600-19844600	Strong transcription	Adipose Nuclei	Adipose

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