Variant report

Variant	rs73303979
Chromosome Location	chr17:19832878-19832879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ULK2-1	chr17:19832685-19833050	ENSG00000266126.1

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2072337	1.00[ASN][1000 genomes]
rs28424266	0.90[ASN][1000 genomes]
rs4141185	1.00[ASN][1000 genomes]
rs59294806	0.89[ASN][1000 genomes]
rs61093861	0.81[AFR][1000 genomes]
rs61655182	0.81[AFR][1000 genomes]
rs73303985	0.81[AFR][1000 genomes]
rs8065122	0.85[ASN][1000 genomes]
rs9893296	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv907869	chr17:19795774-19926836	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833394	chr17:19827714-19999577	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19802800-19844400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:19802800-19846400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:19802800-19852400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr17:19803000-19851800	Strong transcription	Fetal Thymus	thymus
5	chr17:19803200-19840800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:19803600-19845400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr17:19803600-19848000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:19804000-19844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr17:19804000-19853000	Strong transcription	Dnd41	blood
10	chr17:19806200-19844000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr17:19806200-19844600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr17:19806400-19846200	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:19807800-19843800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr17:19809400-19837400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr17:19810200-19836600	Weak transcription	Fetal Heart	heart
16	chr17:19811800-19834800	Weak transcription	Small Intestine	intestine
17	chr17:19812200-19845400	Strong transcription	Liver	Liver
18	chr17:19813200-19833800	Weak transcription	Pancreas	Pancrea
19	chr17:19815000-19838600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr17:19816800-19844400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:19817800-19844200	Weak transcription	Stomach Mucosa	stomach
22	chr17:19818200-19836400	Strong transcription	A549	lung
23	chr17:19818600-19839400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr17:19819600-19833600	Weak transcription	Brain Substantia Nigra	brain
25	chr17:19819600-19844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr17:19819800-19833800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr17:19821000-19833800	Weak transcription	Aorta	Aorta
28	chr17:19821000-19838000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:19821000-19842800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:19822000-19833600	Weak transcription	Gastric	stomach
31	chr17:19823000-19833600	Weak transcription	Brain Germinal Matrix	brain
32	chr17:19823000-19833800	Weak transcription	Esophagus	oesophagus
33	chr17:19823400-19833200	Weak transcription	NHLF	lung
34	chr17:19823400-19837600	Weak transcription	Psoas Muscle	Psoas
35	chr17:19823600-19836600	Weak transcription	HMEC	breast
36	chr17:19824400-19840200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr17:19824800-19840400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr17:19824800-19844200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:19824800-19845800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr17:19825000-19843600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr17:19825000-19845200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr17:19825200-19835600	Strong transcription	Primary T cells from cord blood	blood
43	chr17:19825200-19835600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr17:19825200-19848400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr17:19825200-19851800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr17:19826400-19840400	Strong transcription	Fetal Lung	lung
47	chr17:19826600-19840800	Strong transcription	Primary B cells from cord blood	blood
48	chr17:19826800-19835000	Weak transcription	Right Atrium	heart
49	chr17:19827200-19836000	Strong transcription	Placenta	Placenta
50	chr17:19827600-19851600	Strong transcription	Primary monocytes fromperipheralblood	blood

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