Variant report
| Variant | rs61659045 |
|---|---|
| Chromosome Location | chr8:54314269-54314270 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10105176 | 1.00[EUR][1000 genomes] |
| rs11993413 | 1.00[EUR][1000 genomes] |
| rs28459340 | 1.00[EUR][1000 genomes] |
| rs28561604 | 1.00[EUR][1000 genomes] |
| rs56311815 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58688591 | 1.00[EUR][1000 genomes] |
| rs59149130 | 1.00[EUR][1000 genomes] |
| rs59814819 | 1.00[EUR][1000 genomes] |
| rs60074714 | 1.00[EUR][1000 genomes] |
| rs61393155 | 1.00[EUR][1000 genomes] |
| rs7010993 | 1.00[EUR][1000 genomes] |
| rs73586460 | 1.00[EUR][1000 genomes] |
| rs73586462 | 1.00[EUR][1000 genomes] |
| rs73586468 | 1.00[EUR][1000 genomes] |
| rs73586473 | 1.00[EUR][1000 genomes] |
| rs73586475 | 1.00[EUR][1000 genomes] |
| rs73586480 | 1.00[EUR][1000 genomes] |
| rs73586483 | 1.00[EUR][1000 genomes] |
| rs73586485 | 1.00[EUR][1000 genomes] |
| rs73586497 | 1.00[EUR][1000 genomes] |
| rs73586498 | 1.00[EUR][1000 genomes] |
| rs73588569 | 1.00[EUR][1000 genomes] |
| rs73588581 | 1.00[EUR][1000 genomes] |
| rs73589344 | 1.00[EUR][1000 genomes] |
| rs73596413 | 1.00[EUR][1000 genomes] |
| rs73598462 | 1.00[EUR][1000 genomes] |
| rs73598464 | 1.00[EUR][1000 genomes] |
| rs73679763 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73679764 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7839953 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016224 | chr8:53719941-54367534 | Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv530534 | chr8:53787984-54367353 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv3377304 | chr8:53873441-54380875 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv2752674 | chr8:54181147-54483747 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:54304800-54332200 | Weak transcription | Left Ventricle | heart |
| 2 | chr8:54307400-54321400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 3 | chr8:54312000-54318400 | Weak transcription | Right Ventricle | heart |
