Variant report

Variant	rs73598462
Chromosome Location	chr8:54400063-54400064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10105176	1.00[EUR][1000 genomes]
rs11993413	1.00[EUR][1000 genomes]
rs28459340	1.00[EUR][1000 genomes]
rs28561604	1.00[EUR][1000 genomes]
rs56311815	1.00[EUR][1000 genomes]
rs58688591	1.00[EUR][1000 genomes]
rs59149130	1.00[EUR][1000 genomes]
rs59814819	1.00[EUR][1000 genomes]
rs60074714	1.00[EUR][1000 genomes]
rs61393155	1.00[EUR][1000 genomes]
rs61659045	1.00[EUR][1000 genomes]
rs73586460	1.00[EUR][1000 genomes]
rs73586462	1.00[EUR][1000 genomes]
rs73586468	1.00[EUR][1000 genomes]
rs73586473	1.00[EUR][1000 genomes]
rs73586475	1.00[EUR][1000 genomes]
rs73586480	1.00[EUR][1000 genomes]
rs73586483	1.00[EUR][1000 genomes]
rs73586485	1.00[EUR][1000 genomes]
rs73586497	1.00[EUR][1000 genomes]
rs73586498	1.00[EUR][1000 genomes]
rs73588569	1.00[EUR][1000 genomes]
rs73588581	1.00[EUR][1000 genomes]
rs73596413	1.00[EUR][1000 genomes]
rs73598464	1.00[EUR][1000 genomes]
rs73598468	0.92[AFR][1000 genomes]
rs73679763	1.00[EUR][1000 genomes]
rs73679764	1.00[EUR][1000 genomes]
rs7839953	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54398200-54402200	Enhancers	Fetal Heart	heart
2	chr8:54398200-54403400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:54398400-54401200	Weak transcription	Ovary	ovary
4	chr8:54399200-54408200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:54400000-54400400	Weak transcription	Aorta	Aorta
6	chr8:54400000-54400400	Weak transcription	Right Ventricle	heart
7	chr8:54400000-54407400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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