Variant report

Variant	rs61662075
Chromosome Location	chr4:129007460-129007461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128986963..128989911-chr4:129006823..129010664,3	K562	blood:
2	chr4:128986963..128988724-chr4:129006823..129009589,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11932481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935232	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012926	0.97[AFR][1000 genomes]
rs17012942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012954	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2126113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4487359	0.82[AFR][1000 genomes]
rs57297662	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57767415	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59664646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60096181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60995278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61373286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836536	1.00[AMR][1000 genomes]
rs6844291	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv1018952	chr4:128850790-129082821	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv595388	chr4:128853913-129084831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv1019555	chr4:128901614-129088903	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	esv1829517	chr4:128982085-129012638	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
17	esv1831536	chr4:128982085-129012638	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
18	nsv595392	chr4:128982085-129012638	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
19	nsv595393	chr4:128982137-129012638	Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
20	esv1840969	chr4:128982254-129012181	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
21	esv1792524	chr4:128983925-129133826	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128983800-129027600	Weak transcription	Brain Hippocampus Middle	brain
2	chr4:128983800-129066600	Weak transcription	Esophagus	oesophagus
3	chr4:128983800-129066600	Weak transcription	Small Intestine	intestine
4	chr4:128984200-129018800	Weak transcription	A549	lung
5	chr4:128984200-129024800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:128984200-129029000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:128984200-129035200	Weak transcription	NHLF	lung
8	chr4:128984400-129012600	Weak transcription	Lung	lung
9	chr4:128984400-129013800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:128984400-129013800	Weak transcription	NHEK	skin
11	chr4:128984400-129018000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:128984400-129020000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:128986400-129014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:128986400-129019400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:128987200-129018200	Weak transcription	Psoas Muscle	Psoas
16	chr4:128990800-129013800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:128991000-129031000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:128992800-129029000	Weak transcription	Brain Substantia Nigra	brain
19	chr4:128992800-129038400	Weak transcription	Thymus	Thymus
20	chr4:128993800-129012400	Weak transcription	HSMMtube	muscle
21	chr4:128994200-129066400	Weak transcription	Brain Angular Gyrus	brain
22	chr4:128994400-129009600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:128994400-129025200	Weak transcription	Aorta	Aorta
24	chr4:128994800-129031000	Weak transcription	HMEC	breast
25	chr4:128995600-129035800	Weak transcription	Hela-S3	cervix
26	chr4:128996200-129008400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:128997000-129025000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:128997000-129036800	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:128997000-129054200	Weak transcription	Right Ventricle	heart
30	chr4:128997400-129037400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:128997800-129029400	Weak transcription	Spleen	Spleen
32	chr4:128998400-129013800	Weak transcription	Fetal Kidney	kidney
33	chr4:128998400-129020000	Weak transcription	Fetal Brain Male	brain
34	chr4:128998400-129029000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:128999000-129032000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:128999400-129013800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:128999400-129020400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:128999400-129022600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr4:129000200-129009200	Weak transcription	HUVEC	blood vessel
40	chr4:129000200-129020600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:129000200-129066600	Weak transcription	Colonic Mucosa	Colon
42	chr4:129000400-129017400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr4:129001200-129018600	Weak transcription	Pancreas	Pancrea
44	chr4:129001400-129018000	Weak transcription	Ovary	ovary
45	chr4:129001400-129020200	Weak transcription	Brain Germinal Matrix	brain
46	chr4:129001600-129013800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr4:129001800-129013800	Weak transcription	Left Ventricle	heart
48	chr4:129002000-129030600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr4:129003400-129018200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:129003600-129008600	Weak transcription	K562	blood

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