Variant report

Variant	rs6844291
Chromosome Location	chr4:128953444-128953445
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128951358..128954416-chr4:128957350..128961116,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11932481	1.00[AMR][1000 genomes]
rs11935232	1.00[AMR][1000 genomes]
rs11939629	1.00[AMR][1000 genomes]
rs17012942	1.00[AMR][1000 genomes]
rs17012954	1.00[AMR][1000 genomes]
rs2126113	1.00[AMR][1000 genomes]
rs57297662	1.00[AMR][1000 genomes]
rs57767415	1.00[AMR][1000 genomes]
rs59664646	1.00[AMR][1000 genomes]
rs60096181	1.00[AMR][1000 genomes]
rs60995278	1.00[AMR][1000 genomes]
rs61373286	1.00[AMR][1000 genomes]
rs61662075	1.00[AMR][1000 genomes]
rs6818207	1.00[YRI][hapmap]
rs6820138	1.00[YRI][hapmap]
rs6836536	1.00[AMR][1000 genomes]
rs6850549	1.00[YRI][hapmap]
rs6850726	1.00[YRI][hapmap]
rs7658443	1.00[YRI][hapmap]
rs7665531	1.00[YRI][hapmap]
rs7694045	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv1018952	chr4:128850790-129082821	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv595388	chr4:128853913-129084831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv1019555	chr4:128901614-129088903	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128887600-128981200	Weak transcription	Psoas Muscle	Psoas
2	chr4:128888400-128956000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:128890400-128958600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:128893600-128954200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:128893600-128955800	Weak transcription	Right Ventricle	heart
6	chr4:128895800-128953600	Weak transcription	Pancreas	Pancrea
7	chr4:128917400-128959000	Weak transcription	K562	blood
8	chr4:128918200-128954600	Weak transcription	Brain Angular Gyrus	brain
9	chr4:128924800-128954400	Weak transcription	Fetal Brain Male	brain
10	chr4:128926600-128954800	Weak transcription	Colonic Mucosa	Colon
11	chr4:128933000-128954800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:128934000-128954600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:128934400-128963000	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:128935200-128956000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:128935600-128962400	Weak transcription	HMEC	breast
16	chr4:128938000-128954200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr4:128938400-128953600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:128938800-128962000	Weak transcription	NH-A	brain
19	chr4:128939000-128953600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr4:128940000-128959000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:128941400-128959000	Weak transcription	HSMMtube	muscle
22	chr4:128941800-128955200	Weak transcription	Spleen	Spleen
23	chr4:128941800-128962600	Weak transcription	Small Intestine	intestine
24	chr4:128941800-128963000	Weak transcription	Fetal Kidney	kidney
25	chr4:128942400-128955400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:128943200-128953600	Weak transcription	NHDF-Ad	bronchial
27	chr4:128943800-128953800	Strong transcription	Fetal Muscle Leg	muscle
28	chr4:128945600-128959000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:128945600-128961800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr4:128945800-128954400	Weak transcription	GM12878-XiMat	blood
31	chr4:128946600-128954200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:128946600-128955000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:128946600-128955200	Weak transcription	Ovary	ovary
34	chr4:128947000-128953600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:128947000-128954600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr4:128947000-128963000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:128947600-128954000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:128948000-128953800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr4:128948000-128962800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr4:128948200-128953600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:128948200-128954000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:128948600-128959000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:128949000-128954600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:128950000-128954400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr4:128950400-128960400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:128950600-128954800	Weak transcription	Fetal Lung	lung
47	chr4:128950600-128955200	Weak transcription	Placenta	Placenta
48	chr4:128950600-128955400	Weak transcription	Fetal Brain Female	brain
49	chr4:128950600-128958400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:128950600-128959200	Weak transcription	Osteobl	bone

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