Variant report

Variant	rs61676348
Chromosome Location	chr6:25251348-25251349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16890115	1.00[EUR][1000 genomes]
rs16890202	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16890323	1.00[EUR][1000 genomes]
rs1880273	1.00[EUR][1000 genomes]
rs2206196	1.00[AMR][1000 genomes]
rs3920496	1.00[AMR][1000 genomes]
rs59172512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60614435	1.00[EUR][1000 genomes]
rs73388152	1.00[EUR][1000 genomes]
rs73388164	1.00[EUR][1000 genomes]
rs73390127	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73392316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73392382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883483	chr6:25200842-25272435	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883484	chr6:25237288-25303100	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25250600-25251400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:25250600-25251400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:25250600-25251800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:25250800-25251800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:25250800-25251800	Enhancers	HMEC	breast
6	chr6:25250800-25251800	Enhancers	HSMM	muscle
7	chr6:25251000-25251400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:25251000-25251600	Enhancers	Thymus	Thymus
9	chr6:25251000-25251600	Enhancers	Osteobl	bone
10	chr6:25251000-25251800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:25251000-25251800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:25251000-25251800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr6:25251000-25251800	Enhancers	NHDF-Ad	bronchial
14	chr6:25251000-25251800	Enhancers	NHEK	skin
15	chr6:25251000-25252000	Enhancers	Fetal Thymus	thymus
16	chr6:25251000-25252000	Enhancers	NH-A	brain
17	chr6:25251200-25251600	Enhancers	GM12878-XiMat	blood
18	chr6:25251200-25251600	Flanking Active TSS	Hela-S3	cervix
19	chr6:25251200-25251600	Enhancers	HSMMtube	muscle
20	chr6:25251200-25251800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:25251200-25252000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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