Variant report

Variant	rs73388164
Chromosome Location	chr6:25182277-25182278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25179558..25182381-chr6:25192541..25194103,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222373	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10214565	1.00[EUR][1000 genomes]
rs1172085	1.00[EUR][1000 genomes]
rs16890115	1.00[EUR][1000 genomes]
rs16890202	1.00[EUR][1000 genomes]
rs16890323	1.00[EUR][1000 genomes]
rs1880273	1.00[EUR][1000 genomes]
rs554473	1.00[EUR][1000 genomes]
rs58400813	1.00[EUR][1000 genomes]
rs59172512	1.00[EUR][1000 genomes]
rs60614435	1.00[EUR][1000 genomes]
rs61676348	1.00[EUR][1000 genomes]
rs6904367	1.00[EUR][1000 genomes]
rs6940553	1.00[EUR][1000 genomes]
rs73388152	1.00[EUR][1000 genomes]
rs73390127	1.00[EUR][1000 genomes]
rs73392316	1.00[EUR][1000 genomes]
rs73392382	1.00[EUR][1000 genomes]
rs7765755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv462663	chr6:25156197-25234884	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv601167	chr6:25156197-25234884	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25175200-25192800	Weak transcription	Aorta	Aorta
2	chr6:25176200-25192800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:25177000-25191800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:25177000-25194600	Weak transcription	Placenta	Placenta
5	chr6:25177600-25182600	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:25179000-25182600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:25179000-25187000	Weak transcription	Spleen	Spleen
8	chr6:25179600-25182600	Enhancers	NHDF-Ad	bronchial
9	chr6:25179800-25192600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:25180000-25182400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:25180000-25182400	Weak transcription	NHLF	lung
12	chr6:25180000-25182600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:25180200-25182800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:25181000-25182600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:25181200-25186800	Weak transcription	Osteobl	bone
16	chr6:25181200-25191600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:25181400-25182400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:25181600-25182800	Enhancers	HMEC	breast
19	chr6:25181600-25183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:25181800-25182600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:25181800-25182600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:25181800-25182600	Enhancers	HSMM	muscle
23	chr6:25181800-25182800	Enhancers	Hela-S3	cervix
24	chr6:25182000-25182400	Enhancers	HSMMtube	muscle
25	chr6:25182000-25183200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:25182200-25182600	Enhancers	NHEK	skin

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