Variant report

Variant	rs61680130
Chromosome Location	chr5:114943770-114943771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114943037..114944683-chr5:115175675..115177523,2	MCF-7	breast:
2	chr5:114938174..114939846-chr5:114942589..114944431,2	K562	blood:
3	chr5:114936292..114939674-chr5:114939747..114944089,6	K562	blood:

Variant related genes	Relation type
ENSG00000177879	Chromatin interaction
ENSG00000145782	Chromatin interaction
ENSG00000249249	Chromatin interaction
ENSG00000243414	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56323508	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60942061	1.00[AMR][1000 genomes]
rs73780309	1.00[AMR][1000 genomes]
rs73780317	1.00[AMR][1000 genomes]
rs73780389	1.00[AMR][1000 genomes]
rs73780604	1.00[AMR][1000 genomes]
rs73782717	1.00[AMR][1000 genomes]
rs73782723	1.00[AMR][1000 genomes]
rs73782724	1.00[AMR][1000 genomes]
rs73782726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114937800-114951600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:114938200-114944400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:114938200-114957200	Weak transcription	Small Intestine	intestine
4	chr5:114938200-114958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:114938200-114960200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:114938400-114944000	Strong transcription	Dnd41	blood
7	chr5:114938400-114951400	Weak transcription	HepG2	liver
8	chr5:114938600-114943800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:114938600-114944000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:114938600-114944400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:114938600-114948400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:114938600-114949600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:114938600-114949600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:114938600-114949800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:114938600-114950000	Weak transcription	Fetal Intestine Large	intestine
16	chr5:114938600-114950000	Weak transcription	HSMMtube	muscle
17	chr5:114938600-114950200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:114938600-114951600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:114938600-114951800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:114938600-114951800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:114938600-114951800	Weak transcription	Esophagus	oesophagus
22	chr5:114938600-114958000	Weak transcription	Ovary	ovary
23	chr5:114938600-114960000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:114938800-114943800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:114938800-114945600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:114938800-114946000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:114938800-114947600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:114938800-114948400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:114938800-114948400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:114938800-114949600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:114938800-114949600	Weak transcription	Hela-S3	cervix
32	chr5:114938800-114950000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:114938800-114950200	Weak transcription	Primary T cells from cord blood	blood
34	chr5:114938800-114951600	Weak transcription	K562	blood
35	chr5:114938800-114951800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr5:114938800-114951800	Weak transcription	Thymus	Thymus
37	chr5:114938800-114951800	Weak transcription	NHLF	lung
38	chr5:114938800-114952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:114938800-114953800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:114938800-114954000	Weak transcription	Fetal Brain Female	brain
41	chr5:114938800-114954200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr5:114938800-114954200	Weak transcription	Colonic Mucosa	Colon
43	chr5:114938800-114957400	Weak transcription	Aorta	Aorta
44	chr5:114938800-114958600	Weak transcription	Right Ventricle	heart
45	chr5:114938800-114960000	Weak transcription	Lung	lung
46	chr5:114939000-114943800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:114939000-114943800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr5:114939000-114943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr5:114939000-114944000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr5:114939000-114944200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links