Variant report

Variant	rs73782726
Chromosome Location	chr5:114961063-114961064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:114880215..114881730-chr5:114959993..114961960,2	K562	blood:
2	chr5:114936247..114938177-chr5:114959534..114962655,3	K562	blood:
3	chr5:114934797..114939548-chr5:114953575..114961976,8	K562	blood:
4	chr5:114960865..114962954-chr5:115170753..115172835,2	MCF-7	breast:
5	chr5:114960793..114963745-chr5:114966203..114968929,3	MCF-7	breast:
6	chr5:114823713..114825523-chr5:114959295..114961713,2	K562	blood:
7	chr5:114630838..114633826-chr5:114960976..114962823,3	MCF-7	breast:
8	chr5:114959789..114964126-chr5:115174280..115179155,11	MCF-7	breast:
9	chr5:114959972..114961559-chr5:114968559..114970452,2	K562	blood:
10	chr5:114630095..114632050-chr5:114960167..114962829,2	MCF-7	breast:
11	chr5:114960090..114964183-chr5:115419193..115421485,4	MCF-7	breast:
12	chr5:114959625..114963439-chr5:115175786..115178902,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145781	Chromatin interaction
ENSG00000271918	Chromatin interaction
ENSG00000249944	Chromatin interaction
ENSG00000134970	Chromatin interaction
ENSG00000243414	Chromatin interaction
ENSG00000145782	Chromatin interaction
ENSG00000249249	Chromatin interaction
ENSG00000164221	Chromatin interaction
ENSG00000145780	Chromatin interaction
ENSG00000177879	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56323508	1.00[AMR][1000 genomes]
rs60942061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61680130	1.00[AMR][1000 genomes]
rs73780309	1.00[AMR][1000 genomes]
rs73780317	1.00[AMR][1000 genomes]
rs73780389	1.00[AMR][1000 genomes]
rs73780604	1.00[AMR][1000 genomes]
rs73782717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114958000-114961200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:114958800-114962400	Active TSS	Aorta	Aorta
3	chr5:114959200-114962400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:114959400-114962400	Active TSS	Fetal Intestine Large	intestine
5	chr5:114959400-114962400	Active TSS	Left Ventricle	heart
6	chr5:114959600-114961200	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr5:114959600-114961400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:114959600-114962600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr5:114959600-114962800	Active TSS	GM12878-XiMat	blood
10	chr5:114959800-114961200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr5:114959800-114961600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:114959800-114962400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:114960000-114961200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr5:114960000-114961200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr5:114960000-114961400	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr5:114960000-114961400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr5:114960000-114961600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr5:114960000-114961600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:114960000-114961600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:114960000-114962400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:114960000-114962400	Active TSS	Lung	lung
22	chr5:114960000-114962400	Active TSS	Pancreas	Pancrea
23	chr5:114960000-114962400	Active TSS	NHDF-Ad	bronchial
24	chr5:114960000-114962600	Active TSS	H9 Cell Line	embryonic stem cell
25	chr5:114960000-114962600	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr5:114960000-114962600	Active TSS	Stomach Mucosa	stomach
27	chr5:114960200-114961200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:114960200-114961200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:114960200-114961200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:114960200-114961400	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr5:114960200-114961400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr5:114960200-114961800	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr5:114960200-114962400	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr5:114960200-114962400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:114960200-114962400	Active TSS	Muscle Satellite Cultured Cells	--
36	chr5:114960200-114962400	Active TSS	Gastric	stomach
37	chr5:114960200-114962400	Active TSS	NHLF	lung
38	chr5:114960200-114962600	Active TSS	H1 Cell Line	embryonic stem cell
39	chr5:114960200-114962600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:114960200-114962600	Active TSS	Fetal Muscle Trunk	muscle
41	chr5:114960200-114962600	Active TSS	HSMMtube	muscle
42	chr5:114960400-114961200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:114960400-114961200	Weak transcription	Esophagus	oesophagus
44	chr5:114960400-114961400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:114960400-114961400	Active TSS	Right Atrium	heart
46	chr5:114960400-114962400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr5:114960400-114962400	Active TSS	Ovary	ovary
48	chr5:114960400-114962400	Active TSS	HMEC	breast
49	chr5:114960400-114962600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr5:114960400-114962600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links