Variant report

Variant	rs61684351
Chromosome Location	chr2:10618767-10618768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10586494..10589125-chr2:10618534..10620881,4	K562	blood:
2	chr2:10618413..10620136-chr2:10624862..10627397,2	MCF-7	breast:
3	chr2:10607786..10610149-chr2:10616691..10619066,2	MCF-7	breast:
4	chr2:10581677..10583716-chr2:10618210..10620359,2	K562	blood:
5	chr2:10607518..10610259-chr2:10618688..10621552,2	MCF-7	breast:
6	chr2:10586494..10590709-chr2:10617986..10621603,8	K562	blood:
7	chr2:10610452..10613054-chr2:10617815..10619418,2	MCF-7	breast:
8	chr2:10618429..10620949-chr2:10623572..10626287,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10170147	1.00[EUR][1000 genomes]
rs10189026	1.00[EUR][1000 genomes]
rs10203520	1.00[EUR][1000 genomes]
rs10203529	1.00[EUR][1000 genomes]
rs11897672	1.00[EUR][1000 genomes]
rs11903106	1.00[EUR][1000 genomes]
rs11904157	1.00[EUR][1000 genomes]
rs11904263	1.00[EUR][1000 genomes]
rs13401475	1.00[EUR][1000 genomes]
rs16856239	1.00[EUR][1000 genomes]
rs16856397	1.00[EUR][1000 genomes]
rs28362406	1.00[EUR][1000 genomes]
rs28362407	1.00[EUR][1000 genomes]
rs28362418	1.00[EUR][1000 genomes]
rs58248202	1.00[EUR][1000 genomes]
rs59876692	1.00[EUR][1000 genomes]
rs6738288	1.00[EUR][1000 genomes]
rs73163017	1.00[EUR][1000 genomes]
rs73917006	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv2756905	chr2:10595578-10688969	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2759025	chr2:10595578-10688969	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10601400-10621400	Weak transcription	Right Atrium	heart
2	chr2:10612000-10619600	Enhancers	Fetal Thymus	thymus
3	chr2:10613000-10621200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:10615800-10619400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:10617200-10619200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:10617200-10619400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:10617400-10619200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:10617400-10620000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:10617400-10620000	Enhancers	Fetal Muscle Leg	muscle
10	chr2:10617600-10619200	Weak transcription	HSMM	muscle
11	chr2:10617600-10619800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:10617600-10620000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:10618000-10618800	Weak transcription	HSMMtube	muscle
14	chr2:10618000-10619800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr2:10618000-10620200	Bivalent Enhancer	HepG2	liver
16	chr2:10618400-10618800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
17	chr2:10618400-10618800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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