Variant report

Variant	rs73163017
Chromosome Location	chr2:10502419-10502420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10487432..10490206-chr2:10500170..10502436,2	K562	blood:
2	chr2:10501562..10504279-chr2:10507233..10508878,2	MCF-7	breast:
3	chr2:10478597..10480494-chr2:10502284..10504436,2	MCF-7	breast:
4	chr2:10497570..10499566-chr2:10501950..10504124,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10170147	1.00[EUR][1000 genomes]
rs10189026	1.00[EUR][1000 genomes]
rs10203520	1.00[EUR][1000 genomes]
rs10203529	1.00[EUR][1000 genomes]
rs11897672	1.00[EUR][1000 genomes]
rs11903106	1.00[EUR][1000 genomes]
rs11904157	1.00[EUR][1000 genomes]
rs11904263	1.00[EUR][1000 genomes]
rs13401475	1.00[EUR][1000 genomes]
rs16856239	1.00[EUR][1000 genomes]
rs16856397	1.00[EUR][1000 genomes]
rs28362406	1.00[EUR][1000 genomes]
rs28362407	1.00[EUR][1000 genomes]
rs28362418	1.00[EUR][1000 genomes]
rs58248202	1.00[EUR][1000 genomes]
rs59876692	1.00[EUR][1000 genomes]
rs61684351	1.00[EUR][1000 genomes]
rs6738288	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv873642	chr2:10491985-10532869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10487800-10509200	Weak transcription	Small Intestine	intestine
2	chr2:10487800-10514600	Weak transcription	Fetal Thymus	thymus
3	chr2:10487800-10517800	Weak transcription	Colonic Mucosa	Colon
4	chr2:10487800-10518000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:10488000-10506800	Weak transcription	Osteobl	bone
6	chr2:10488200-10503000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:10488200-10512000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:10489200-10521400	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:10490400-10508600	Weak transcription	Aorta	Aorta
10	chr2:10492000-10515000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:10492600-10516000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:10493000-10520200	Weak transcription	HMEC	breast
13	chr2:10495200-10507800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:10495200-10513000	Weak transcription	NHEK	skin
15	chr2:10496400-10515800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:10496600-10505000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr2:10496600-10514000	Weak transcription	Primary B cells from cord blood	blood
18	chr2:10497000-10505200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:10497000-10514400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:10497000-10514600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:10497800-10505200	Strong transcription	Fetal Intestine Small	intestine
22	chr2:10498400-10502800	Weak transcription	HepG2	liver
23	chr2:10498400-10508000	Weak transcription	Hela-S3	cervix
24	chr2:10499200-10523000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr2:10499400-10503200	Enhancers	Fetal Brain Male	brain
26	chr2:10499600-10503000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:10499600-10509600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:10499800-10502800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr2:10499800-10509200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:10499800-10517200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:10500000-10503000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:10500000-10505200	Weak transcription	Fetal Intestine Large	intestine
33	chr2:10500000-10506800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:10500000-10509400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:10500000-10511200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr2:10500200-10503000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr2:10500200-10503600	Weak transcription	Thymus	Thymus
38	chr2:10500200-10515000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:10500400-10503600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr2:10500400-10504200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr2:10500400-10505000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr2:10500400-10510600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr2:10500400-10512400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr2:10500400-10518200	Weak transcription	Adipose Nuclei	Adipose
45	chr2:10500600-10502600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr2:10500600-10502600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr2:10500600-10502600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr2:10500600-10502800	Enhancers	Fetal Lung	lung
49	chr2:10500600-10508000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:10500600-10509000	Enhancers	Stomach Mucosa	stomach

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