Variant report

Variant	rs61700379
Chromosome Location	chr10:27474253-27474254
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27471397..27474694-chr10:27478152..27480679,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10160190	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10466099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10829184	0.91[AMR][1000 genomes]
rs11015593	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015594	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015621	0.83[AMR][1000 genomes]
rs12241100	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12241557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242277	0.83[AMR][1000 genomes]
rs12242335	0.83[AMR][1000 genomes]
rs12243561	0.83[AMR][1000 genomes]
rs12245061	0.83[AMR][1000 genomes]
rs12246444	0.83[AMR][1000 genomes]
rs12247766	0.83[AMR][1000 genomes]
rs12247836	0.83[AMR][1000 genomes]
rs12248381	0.83[AMR][1000 genomes]
rs12248625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249238	0.83[AMR][1000 genomes]
rs12250273	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12250812	0.83[AMR][1000 genomes]
rs12254121	0.92[AMR][1000 genomes]
rs12254186	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12256490	0.83[AMR][1000 genomes]
rs12258518	0.83[AMR][1000 genomes]
rs12258652	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12262528	0.83[AMR][1000 genomes]
rs12265111	0.83[AMR][1000 genomes]
rs12265193	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12266154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266661	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268202	0.83[AMR][1000 genomes]
rs12269297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16927590	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16927614	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1819351	0.83[AMR][1000 genomes]
rs1985042	0.83[AMR][1000 genomes]
rs2026016	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3904096	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3938775	0.83[AMR][1000 genomes]
rs7068288	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074378	0.83[AMR][1000 genomes]
rs7075878	0.91[AMR][1000 genomes]
rs7079339	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7080047	0.86[AFR][1000 genomes]
rs7081194	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091699	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7096132	0.83[AMR][1000 genomes]
rs728691	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs728692	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7897372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904085	0.83[AMR][1000 genomes]
rs7904245	0.83[AMR][1000 genomes]
rs7907587	0.83[AMR][1000 genomes]
rs7910237	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7910765	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27445000-27486200	Weak transcription	Fetal Heart	heart
2	chr10:27445400-27490800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:27446400-27476200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:27446400-27476400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:27446400-27490800	Weak transcription	Fetal Brain Male	brain
6	chr10:27446400-27499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:27446400-27508400	Weak transcription	Small Intestine	intestine
8	chr10:27446600-27476000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:27446600-27477200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:27447000-27476600	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:27447000-27477000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:27447000-27477800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:27447200-27476200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:27447200-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:27447200-27478000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:27447200-27478200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:27447400-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:27447400-27477200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:27447400-27478200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:27448200-27476000	Strong transcription	Dnd41	blood
21	chr10:27449600-27487200	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:27453000-27487000	Weak transcription	Spleen	Spleen
23	chr10:27454800-27481200	Weak transcription	Brain Substantia Nigra	brain
24	chr10:27454800-27487000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:27455000-27478400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:27455000-27494600	Weak transcription	Aorta	Aorta
27	chr10:27455000-27495200	Weak transcription	Right Ventricle	heart
28	chr10:27455200-27475000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:27455400-27492200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:27455600-27494600	Weak transcription	Pancreas	Pancrea
31	chr10:27455800-27485200	Weak transcription	Colonic Mucosa	Colon
32	chr10:27456200-27484200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:27456200-27484800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr10:27456200-27490800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:27456200-27496800	Weak transcription	Esophagus	oesophagus
36	chr10:27456800-27487000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:27457000-27475200	Weak transcription	Hela-S3	cervix
38	chr10:27457400-27481400	Weak transcription	NHLF	lung
39	chr10:27457600-27485200	Weak transcription	Brain Angular Gyrus	brain
40	chr10:27459000-27484400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:27459200-27489800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:27459400-27478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:27461400-27476200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:27461800-27476600	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr10:27463400-27477000	Strong transcription	Placenta	Placenta
46	chr10:27464800-27492800	Weak transcription	HSMMtube	muscle
47	chr10:27465800-27476200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:27466000-27475600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:27466400-27478200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:27466600-27481000	Weak transcription	NHDF-Ad	bronchial

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