Variant report

Variant	rs7068288
Chromosome Location	chr10:27446579-27446580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:27446182-27446643	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:27446137-27447684	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:27446193..27447784-chr10:27452402..27455185,2	K562	blood:
2	chr10:27446193..27448131-chr10:27454155..27455993,2	K562	blood:
3	chr10:27443444..27445356-chr10:27445718..27447282,2	MCF-7	breast:
4	chr10:27446133..27449073-chr10:27468277..27471511,3	K562	blood:
5	chr10:27425252..27427965-chr10:27444886..27446851,2	MCF-7	breast:
6	chr10:27442176..27446829-chr10:27524472..27534671,19	K562	blood:
7	chr10:27445313..27446905-chr10:27529992..27532345,2	MCF-7	breast:

No data

Variant related genes	Relation type
YME1L1	TF binding region
ENSG00000107897	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000120539	Chromatin interaction
ENSG00000263577	Chromatin interaction
ENSG00000136758	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10160190	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10466099	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10829184	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11015593	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015621	0.83[AMR][1000 genomes]
rs12241100	0.83[AMR][1000 genomes]
rs12241557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242277	0.83[AMR][1000 genomes]
rs12242335	0.83[AMR][1000 genomes]
rs12243561	0.83[AMR][1000 genomes]
rs12245061	0.83[AMR][1000 genomes]
rs12246444	0.83[AMR][1000 genomes]
rs12247766	0.83[AMR][1000 genomes]
rs12247836	0.83[AMR][1000 genomes]
rs12248381	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12248625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249238	0.83[AMR][1000 genomes]
rs12250273	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12250812	0.83[AMR][1000 genomes]
rs12254121	0.92[AMR][1000 genomes]
rs12254186	0.92[AMR][1000 genomes]
rs12256490	0.83[AMR][1000 genomes]
rs12258518	0.83[AMR][1000 genomes]
rs12258652	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12262528	0.83[AMR][1000 genomes]
rs12265111	0.83[AMR][1000 genomes]
rs12265193	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12266154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266661	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268202	0.83[AMR][1000 genomes]
rs12269297	1.00[AMR][1000 genomes]
rs16927590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16927614	0.83[AMR][1000 genomes]
rs1819351	0.83[AMR][1000 genomes]
rs1985042	0.83[AMR][1000 genomes]
rs2026016	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3904096	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3938775	0.83[AMR][1000 genomes]
rs61700379	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074378	0.83[AMR][1000 genomes]
rs7075878	0.91[AMR][1000 genomes]
rs7079339	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7081194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091699	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7096132	0.83[AMR][1000 genomes]
rs728691	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs728692	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7897372	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904085	0.83[AMR][1000 genomes]
rs7904245	0.83[AMR][1000 genomes]
rs7907587	0.83[AMR][1000 genomes]
rs7910237	0.83[AMR][1000 genomes]
rs7910765	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27445000-27447400	Enhancers	Stomach Mucosa	stomach
2	chr10:27445000-27454200	Weak transcription	Brain Substantia Nigra	brain
3	chr10:27445000-27486200	Weak transcription	Fetal Heart	heart
4	chr10:27445200-27447600	Weak transcription	Lung	lung
5	chr10:27445200-27453000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:27445200-27454200	Weak transcription	Ovary	ovary
7	chr10:27445200-27454400	Weak transcription	Gastric	stomach
8	chr10:27445400-27447200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:27445400-27447400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:27445400-27447600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:27445400-27447600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:27445400-27450600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:27445400-27450600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:27445400-27452600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:27445400-27452800	Weak transcription	Left Ventricle	heart
16	chr10:27445400-27452800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:27445400-27453000	Weak transcription	Right Ventricle	heart
18	chr10:27445400-27453000	Weak transcription	HSMMtube	muscle
19	chr10:27445400-27454200	Weak transcription	Brain Anterior Caudate	brain
20	chr10:27445400-27454200	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:27445400-27454200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:27445400-27454400	Weak transcription	Aorta	Aorta
23	chr10:27445400-27454400	Weak transcription	Brain Angular Gyrus	brain
24	chr10:27445400-27490800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:27445600-27446600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:27445600-27446600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:27445600-27446600	Enhancers	NHEK	skin
28	chr10:27445600-27447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:27445600-27447200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:27445600-27447200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:27445600-27447200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:27445600-27447200	Weak transcription	Fetal Intestine Small	intestine
33	chr10:27445600-27447200	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:27445600-27447200	Weak transcription	Fetal Stomach	stomach
35	chr10:27445600-27447400	Weak transcription	Primary T cells from cord blood	blood
36	chr10:27445600-27447400	Weak transcription	Adipose Nuclei	Adipose
37	chr10:27445600-27447400	Weak transcription	Fetal Intestine Large	intestine
38	chr10:27445600-27447400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:27445600-27447600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:27445600-27447600	Weak transcription	Liver	Liver
41	chr10:27445600-27447800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:27445600-27448800	Weak transcription	Pancreas	Pancrea
43	chr10:27445600-27449000	Weak transcription	HSMM	muscle
44	chr10:27445600-27449400	Weak transcription	Colonic Mucosa	Colon
45	chr10:27445600-27449600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:27445600-27452600	Weak transcription	Esophagus	oesophagus
47	chr10:27445600-27452600	Weak transcription	Spleen	Spleen
48	chr10:27445600-27454200	Weak transcription	Fetal Kidney	kidney
49	chr10:27445600-27470800	Weak transcription	Psoas Muscle	Psoas
50	chr10:27445800-27446600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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