Variant report

Variant	rs61705259
Chromosome Location	chr7:26006452-26006453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56182391	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59097241	1.00[AMR][1000 genomes]
rs6960357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685518	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685519	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685520	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685521	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685522	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685523	1.00[AMR][1000 genomes]
rs73685525	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26002800-26007200	Weak transcription	Spleen	Spleen
2	chr7:26002800-26009000	Weak transcription	Right Atrium	heart
3	chr7:26004800-26007200	Weak transcription	Gastric	stomach
4	chr7:26005000-26006600	Weak transcription	Fetal Thymus	thymus
5	chr7:26005200-26006600	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:26005200-26006600	Weak transcription	Pancreas	Pancrea
7	chr7:26006000-26009000	Flanking Active TSS	GM12878-XiMat	blood
8	chr7:26006200-26007000	Active TSS	Colonic Mucosa	Colon
9	chr7:26006200-26008800	Active TSS	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links