Variant report

Variant	rs73685522
Chromosome Location	chr7:26004548-26004549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56182391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59097241	1.00[AMR][1000 genomes]
rs61705259	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960357	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685523	1.00[AMR][1000 genomes]
rs73685525	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685527	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685528	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685532	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26002800-26007200	Weak transcription	Spleen	Spleen
2	chr7:26002800-26009000	Weak transcription	Right Atrium	heart
3	chr7:26003200-26004800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr7:26003400-26005200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr7:26003400-26005600	Flanking Active TSS	GM12878-XiMat	blood
6	chr7:26003600-26004800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr7:26003800-26005000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr7:26003800-26005600	Enhancers	Fetal Lung	lung
9	chr7:26004000-26004800	Flanking Active TSS	Liver	Liver
10	chr7:26004000-26004800	Enhancers	Gastric	stomach
11	chr7:26004000-26005000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:26004000-26005000	Enhancers	Fetal Thymus	thymus
13	chr7:26004000-26005200	Enhancers	Pancreas	Pancrea
14	chr7:26004000-26005200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr7:26004400-26004600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
16	chr7:26004400-26005000	Bivalent Enhancer	Hela-S3	cervix
17	chr7:26004400-26005200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:26004400-26005200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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