Variant report

Variant	rs61710141
Chromosome Location	chr3:141000175-141000176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140994584..140997206-chr3:140998045..141000417,2	K562	blood:
2	chr3:140997890..141000660-chr3:141000973..141003203,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16851210	1.00[EUR][1000 genomes]
rs16851215	1.00[EUR][1000 genomes]
rs16851264	1.00[EUR][1000 genomes]
rs61539616	1.00[EUR][1000 genomes]
rs6773280	1.00[EUR][1000 genomes]
rs6779202	1.00[EUR][1000 genomes]
rs72982504	1.00[EUR][1000 genomes]
rs72982505	1.00[EUR][1000 genomes]
rs72982506	1.00[EUR][1000 genomes]
rs72982513	1.00[EUR][1000 genomes]
rs72982515	1.00[EUR][1000 genomes]
rs72982516	1.00[EUR][1000 genomes]
rs72982519	1.00[EUR][1000 genomes]
rs72994972	1.00[EUR][1000 genomes]
rs73869568	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140957400-141001000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
3	chr3:140979000-141000800	Weak transcription	Fetal Kidney	kidney
4	chr3:140979000-141013200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:140980800-141005600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:140981200-141013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:140981200-141013400	Weak transcription	Colonic Mucosa	Colon
8	chr3:140981400-141001000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:140983600-141021600	Weak transcription	Esophagus	oesophagus
10	chr3:140984200-141000800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:140984800-141006400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:140986200-141000800	Weak transcription	Fetal Lung	lung
13	chr3:140988200-141022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:140988400-141001800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:140993200-141014200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:140993600-141004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:140994000-141006000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:140994400-141000200	Weak transcription	Ovary	ovary
19	chr3:140994400-141005600	Weak transcription	GM12878-XiMat	blood
20	chr3:140994400-141009000	Strong transcription	Dnd41	blood
21	chr3:140994600-141006800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:140994600-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:140994600-141013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:140995200-141007000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr3:140995400-141009000	Weak transcription	HepG2	liver
26	chr3:140996000-141012400	Strong transcription	Thymus	Thymus
27	chr3:140996200-141012400	Strong transcription	Primary T cells from cord blood	blood
28	chr3:140996400-141000400	Enhancers	Fetal Heart	heart
29	chr3:140996400-141004600	Strong transcription	Fetal Intestine Small	intestine
30	chr3:140996400-141012800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:140996600-141002000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:140997200-141006200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:140997200-141013800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:140998000-141000800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:140998000-141001600	Strong transcription	Fetal Brain Female	brain
36	chr3:140998000-141012800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr3:140998200-141001200	Strong transcription	Right Ventricle	heart
38	chr3:140998200-141005600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr3:140998200-141005800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:140998200-141005800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr3:140998200-141006200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:140998200-141006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:140998200-141010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:140998200-141010600	Weak transcription	Psoas Muscle	Psoas
45	chr3:140998200-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:140998200-141013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr3:140998400-141000600	Weak transcription	Brain Angular Gyrus	brain
48	chr3:140998400-141001200	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr3:140998400-141002400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr3:140998400-141006600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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