Variant report

Variant	rs6773280
Chromosome Location	chr3:140965274-140965275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140965187..140967978-chr3:140974233..140977075,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16851210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16851215	1.00[EUR][1000 genomes]
rs16851264	1.00[EUR][1000 genomes]
rs61539616	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61710141	1.00[EUR][1000 genomes]
rs6779202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982504	1.00[EUR][1000 genomes]
rs72982505	1.00[EUR][1000 genomes]
rs72982506	1.00[EUR][1000 genomes]
rs72982513	1.00[EUR][1000 genomes]
rs72982515	1.00[EUR][1000 genomes]
rs72982516	1.00[EUR][1000 genomes]
rs72982519	1.00[EUR][1000 genomes]
rs72994972	1.00[EUR][1000 genomes]
rs73869568	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140951600-140979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:140955200-140980600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:140955400-140968400	Genic enhancers	Dnd41	blood
4	chr3:140955400-140985800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:140957400-140967800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:140957400-140967800	Weak transcription	Gastric	stomach
7	chr3:140957400-141001000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:140957800-140973600	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:140959200-140966200	Enhancers	Fetal Heart	heart
10	chr3:140959200-140998400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:140960000-140980000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:140960800-140969800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:140961000-140978800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:140961200-140973600	Weak transcription	Brain Angular Gyrus	brain
15	chr3:140961200-140985800	Weak transcription	Adipose Nuclei	Adipose
16	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
17	chr3:140961400-140967800	Weak transcription	Esophagus	oesophagus
18	chr3:140961400-140969400	Weak transcription	HSMMtube	muscle
19	chr3:140961400-140974200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:140961400-140974200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:140961400-140974400	Weak transcription	Placenta	Placenta
22	chr3:140961400-140983200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:140961600-140971400	Weak transcription	Fetal Brain Female	brain
24	chr3:140962000-140985800	Weak transcription	Brain Anterior Caudate	brain
25	chr3:140962200-140974200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:140962400-140977000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:140962400-140979200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:140962600-140967800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:140962600-140967800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:140962600-140967800	Weak transcription	Fetal Brain Male	brain
31	chr3:140962600-140969200	Weak transcription	Fetal Stomach	stomach
32	chr3:140962600-140969800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:140962600-140971600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:140962600-140974200	Weak transcription	Spleen	Spleen
35	chr3:140962600-140974600	Weak transcription	Right Atrium	heart
36	chr3:140962600-140975000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr3:140962600-140978800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:140962600-140979600	Weak transcription	Fetal Intestine Large	intestine
39	chr3:140962600-140980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:140962800-140968000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr3:140962800-140969400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:140962800-140971000	Weak transcription	Fetal Intestine Small	intestine
43	chr3:140962800-140971600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:140963000-140967800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr3:140963400-140966400	Strong transcription	Fetal Thymus	thymus
46	chr3:140963400-140982800	Weak transcription	Brain Germinal Matrix	brain
47	chr3:140963600-140978800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr3:140963800-140970000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr3:140964000-140967000	Strong transcription	Thymus	Thymus
50	chr3:140964400-140966000	Enhancers	HepG2	liver

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