Variant report

Variant	rs61729146
Chromosome Location	chr19:38655327-38655328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12386130	1.00[EUR][1000 genomes]
rs28470392	1.00[EUR][1000 genomes]
rs45589333	1.00[EUR][1000 genomes]
rs59924572	1.00[EUR][1000 genomes]
rs7249463	1.00[EUR][1000 genomes]
rs7254333	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833821	chr19:38629937-38756792	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38638200-38667200	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr19:38644000-38659200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr19:38645600-38660800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr19:38646000-38661000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr19:38651400-38658400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:38652400-38656400	Strong transcription	HepG2	liver
7	chr19:38652400-38657400	Strong transcription	Brain Angular Gyrus	brain
8	chr19:38652600-38655800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr19:38652600-38656400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
10	chr19:38653000-38655400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:38653400-38656400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr19:38653400-38657800	Strong transcription	Colonic Mucosa	Colon
13	chr19:38653400-38658400	Strong transcription	Rectal Smooth Muscle	rectum
14	chr19:38653400-38658800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr19:38653400-38659600	Strong transcription	Primary B cells from cord blood	blood
16	chr19:38653400-38659600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr19:38653400-38660400	Strong transcription	GM12878-XiMat	blood
18	chr19:38653400-38661400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr19:38653400-38663400	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr19:38653600-38656200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr19:38653600-38656200	Strong transcription	Brain Anterior Caudate	brain
22	chr19:38653600-38656200	Strong transcription	Brain Cingulate Gyrus	brain
23	chr19:38653600-38656200	Strong transcription	Brain Inferior Temporal Lobe	brain
24	chr19:38653600-38656200	Strong transcription	HSMM	muscle
25	chr19:38653600-38656200	Strong transcription	HSMMtube	muscle
26	chr19:38653600-38656400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr19:38653600-38656400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:38653600-38656400	Strong transcription	Pancreatic Islets	Pancreatic Islet
29	chr19:38653600-38656400	Strong transcription	Right Ventricle	heart
30	chr19:38653600-38657400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr19:38653600-38657600	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr19:38653600-38657600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr19:38653600-38657600	Strong transcription	Left Ventricle	heart
34	chr19:38653600-38657600	Strong transcription	NH-A	brain
35	chr19:38653600-38658400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr19:38653600-38658600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr19:38653600-38658600	Strong transcription	Ovary	ovary
38	chr19:38653600-38659000	Weak transcription	Fetal Heart	heart
39	chr19:38653600-38659200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr19:38653600-38659600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr19:38653600-38659800	Weak transcription	Fetal Brain Male	brain
42	chr19:38653600-38660200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:38653600-38660200	Strong transcription	Primary T cells from cord blood	blood
44	chr19:38653600-38660400	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr19:38653600-38661200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr19:38653600-38661200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr19:38653600-38661400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr19:38653600-38661400	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr19:38653600-38661600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr19:38653600-38663200	Strong transcription	Gastric	stomach

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