Variant report

Variant	rs61732157
Chromosome Location	chr6:26502012-26502013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:26501647..26503357-chr6:27772900..27774524,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34905463	1.00[AFR][1000 genomes]
rs7773514	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26500600-26502400	Enhancers	K562	blood
2	chr6:26501400-26502200	Enhancers	Lung	lung
3	chr6:26501400-26502400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:26501400-26502400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:26501400-26502400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
6	chr6:26501400-26502400	Flanking Bivalent TSS/Enh	HepG2	liver
7	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
9	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
13	chr6:26501600-26502200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
14	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
15	chr6:26501600-26502200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
16	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
17	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
18	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
19	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
20	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
21	chr6:26501600-26502200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
22	chr6:26501600-26502200	Flanking Active TSS	Right Atrium	heart
23	chr6:26501600-26502200	Bivalent Enhancer	Stomach Mucosa	stomach
24	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
25	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	NHEK	skin
26	chr6:26501600-26502400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:26501600-26502400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr6:26501600-26502400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:26501600-26502400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
30	chr6:26501600-26502400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:26501600-26502400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
32	chr6:26501600-26502400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
36	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
40	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
41	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
42	chr6:26501600-26502600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
43	chr6:26501600-26502600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr6:26501600-26502600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
45	chr6:26501600-26502600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
46	chr6:26501600-26502800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:26501600-26502800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
48	chr6:26501600-26502800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
49	chr6:26501600-26502800	Flanking Active TSS	GM12878-XiMat	blood
50	chr6:26501800-26502200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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