Variant report

Variant	rs61734637
Chromosome Location	chr3:52433151-52433152
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52424863..52429708-chr3:52432804..52436017,4	MCF-7	breast:
2	chr3:52432574..52434187-chr3:52441112..52442710,2	MCF-7	breast:
3	chr3:52421723..52424163-chr3:52432192..52434370,2	MCF-7	breast:
4	chr3:52432045..52433761-chr3:52438744..52440471,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114841	Chromatin interaction
ENSG00000163930	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28997577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35338461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35342983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35491443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35654187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41292362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41292370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55921270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326215	1.00[EUR][1000 genomes]
rs5743845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078569	1.00[EUR][1000 genomes]
rs59410274	1.00[EUR][1000 genomes]
rs61418167	1.00[EUR][1000 genomes]
rs61729402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61729450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61734643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61734653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61736838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61739897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61749019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv984542	chr3:52285682-52516115	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
3	nsv834696	chr3:52317478-52479537	Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
4	nsv834697	chr3:52400578-52579417	Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv876792	chr3:52430526-52575831	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52385400-52434600	Weak transcription	Small Intestine	intestine
2	chr3:52393200-52434800	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:52395000-52443200	Weak transcription	Right Atrium	heart
4	chr3:52395400-52433200	Weak transcription	HSMMtube	muscle
5	chr3:52403400-52433800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:52408000-52433200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:52408000-52436600	Weak transcription	Fetal Kidney	kidney
8	chr3:52410000-52433200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:52410000-52434400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:52410600-52435400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:52414000-52433200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:52414000-52435400	Weak transcription	Fetal Lung	lung
13	chr3:52414800-52434800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:52418600-52442200	Strong transcription	Fetal Intestine Small	intestine
15	chr3:52418800-52441800	Strong transcription	Brain Anterior Caudate	brain
16	chr3:52419000-52441800	Strong transcription	Liver	Liver
17	chr3:52419000-52442000	Strong transcription	Brain Hippocampus Middle	brain
18	chr3:52419000-52442600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:52419200-52435400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:52419200-52441600	Strong transcription	Fetal Stomach	stomach
21	chr3:52419200-52441800	Strong transcription	Brain Angular Gyrus	brain
22	chr3:52419200-52442000	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr3:52419600-52435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:52420000-52442000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:52420200-52442400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:52420200-52442400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:52420200-52442600	Strong transcription	Fetal Intestine Large	intestine
28	chr3:52422600-52441800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:52423600-52434200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:52425600-52442000	Strong transcription	Spleen	Spleen
31	chr3:52426200-52436000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:52426600-52442200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:52427400-52434600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:52427600-52433600	Weak transcription	Stomach Mucosa	stomach
35	chr3:52427600-52433800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:52427600-52434000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr3:52427600-52434200	Weak transcription	Aorta	Aorta
38	chr3:52427800-52434000	Weak transcription	Left Ventricle	heart
39	chr3:52427800-52436000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:52428200-52433200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:52428200-52433400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:52428200-52433600	Weak transcription	Esophagus	oesophagus
43	chr3:52428200-52434400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:52428200-52434400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:52428400-52433200	Weak transcription	Gastric	stomach
46	chr3:52428800-52434600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:52428800-52434600	Weak transcription	Ovary	ovary
48	chr3:52428800-52435200	Weak transcription	Pancreas	Pancrea
49	chr3:52429000-52434800	Weak transcription	Colonic Mucosa	Colon
50	chr3:52429200-52434400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links