The 2.0 version of rSNPBase

Variant report

Variant rs61729402
Chromosome Location chr3:52366368-52366369
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52328800-52367600 Weak transcription Brain Substantia Nigra brain
2 chr3:52330400-52378600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr3:52344600-52378600 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr3:52352000-52367600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr3:52352000-52379800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr3:52352200-52370800 Weak transcription Primary hematopoietic stem cells blood
7 chr3:52352200-52379000 Weak transcription Colonic Mucosa Colon
8 chr3:52352200-52382000 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr3:52352200-52384600 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr3:52352600-52373400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr3:52352600-52379400 Weak transcription Pancreas Pancrea
12 chr3:52353400-52377400 Weak transcription Fetal Muscle Leg muscle
13 chr3:52354400-52379800 Weak transcription Esophagus oesophagus
14 chr3:52354800-52384000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr3:52358200-52372000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr3:52358400-52370200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr3:52358400-52380400 Weak transcription Ovary ovary
18 chr3:52360400-52376200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr3:52361000-52367800 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr3:52361800-52368400 Strong transcription Primary T helper naive cells fromperipheralblood blood
21 chr3:52362200-52375000 Weak transcription Fetal Thymus thymus
22 chr3:52362400-52378200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr3:52362800-52378600 Weak transcription Brain Cingulate Gyrus brain
24 chr3:52364200-52367800 Strong transcription Fetal Stomach stomach
25 chr3:52364200-52368600 Strong transcription Primary T cells from cord blood blood
26 chr3:52364200-52375800 Weak transcription GM12878-XiMat blood
27 chr3:52364200-52383000 Weak transcription Fetal Lung lung
28 chr3:52364400-52366600 Strong transcription Stomach Smooth Muscle stomach
29 chr3:52364400-52367800 Strong transcription Fetal Intestine Small intestine
30 chr3:52364400-52379400 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr3:52364600-52366600 Strong transcription Lung lung
32 chr3:52364600-52367600 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr3:52364600-52368800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr3:52364800-52366600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
35 chr3:52364800-52366600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
36 chr3:52364800-52368000 Weak transcription Left Ventricle heart
37 chr3:52364800-52368400 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr3:52364800-52368600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr3:52364800-52373400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr3:52364800-52373400 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr3:52364800-52394400 Weak transcription HSMMtube muscle
42 chr3:52365000-52366600 Strong transcription Brain Inferior Temporal Lobe brain
43 chr3:52365000-52366600 Strong transcription Spleen Spleen
44 chr3:52365000-52367200 Strong transcription Skeletal Muscle Male skeletal muscle
45 chr3:52365000-52368800 Strong transcription Primary T helper cells fromperipheralblood blood
46 chr3:52365000-52368800 Strong transcription Fetal Adrenal Gland Adrenal Gland
47 chr3:52365000-52372200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr3:52365200-52366600 Strong transcription Brain Hippocampus Middle brain
49 chr3:52365200-52366600 Strong transcription Duodenum Mucosa Duodenum
50 chr3:52365200-52367200 Strong transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015