Variant report

Variant	rs61736388
Chromosome Location	chr4:106639176-106639177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106636338..106638670-chr4:106638884..106641635,3	K562	blood:
2	chr4:106636338..106638846-chr4:106638884..106641539,4	K562	blood:
3	chr4:106628554..106633489-chr4:106634205..106639726,8	K562	blood:

Variant related genes	Relation type
ENSG00000138780	Chromatin interaction
ENSG00000138785	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10009875	1.00[EUR][1000 genomes]
rs10013631	1.00[EUR][1000 genomes]
rs10026561	1.00[EUR][1000 genomes]
rs28403197	1.00[EUR][1000 genomes]
rs28414565	1.00[EUR][1000 genomes]
rs28642176	1.00[EUR][1000 genomes]
rs4434257	1.00[EUR][1000 genomes]
rs61526371	1.00[EUR][1000 genomes]
rs9991722	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106630600-106641800	Weak transcription	Lung	lung
2	chr4:106630600-106642800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106630600-106650600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:106630600-106656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:106630600-106656200	Weak transcription	Esophagus	oesophagus
6	chr4:106630800-106640000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:106630800-106640000	Weak transcription	Placenta	Placenta
8	chr4:106630800-106640400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:106630800-106640600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:106630800-106648000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:106630800-106649200	Weak transcription	Small Intestine	intestine
12	chr4:106630800-106656000	Weak transcription	Ovary	ovary
13	chr4:106630800-106656200	Weak transcription	Left Ventricle	heart
14	chr4:106630800-106656200	Weak transcription	Thymus	Thymus
15	chr4:106630800-106658400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:106631000-106640000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:106631000-106640000	Weak transcription	Fetal Stomach	stomach
18	chr4:106631000-106640200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:106631000-106640200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:106631000-106640400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:106631000-106643000	Weak transcription	Colonic Mucosa	Colon
22	chr4:106631000-106648800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:106631000-106648800	Weak transcription	Brain Germinal Matrix	brain
24	chr4:106631000-106650600	Weak transcription	Fetal Brain Female	brain
25	chr4:106631000-106654600	Weak transcription	Fetal Intestine Large	intestine
26	chr4:106631000-106656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:106631000-106656200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr4:106631000-106658200	Weak transcription	Right Ventricle	heart
29	chr4:106631000-106659000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:106631000-106663000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:106631000-106669400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:106631200-106639400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:106631200-106640400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:106631200-106640400	Weak transcription	Adipose Nuclei	Adipose
35	chr4:106631200-106641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:106631200-106651800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr4:106631400-106639400	Weak transcription	Primary T cells from cord blood	blood
38	chr4:106631400-106640400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:106631400-106656000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr4:106631400-106658800	Weak transcription	A549	lung
41	chr4:106631600-106645400	Weak transcription	Fetal Brain Male	brain
42	chr4:106632000-106639400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:106632000-106646400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:106632000-106648800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:106632200-106640000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:106632200-106641000	Weak transcription	Fetal Lung	lung
47	chr4:106632200-106642800	Weak transcription	Hela-S3	cervix
48	chr4:106633800-106639400	Weak transcription	Dnd41	blood
49	chr4:106633800-106639800	Weak transcription	Fetal Intestine Small	intestine
50	chr4:106634000-106640400	Weak transcription	HepG2	liver

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