Variant report

Variant	rs9991722
Chromosome Location	chr4:106669594-106669595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10009875	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10013631	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10026561	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28403197	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414565	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28642176	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4434257	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs61526371	1.00[EUR][1000 genomes]
rs61736388	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106634000-106693200	Weak transcription	K562	blood
2	chr4:106635600-106669800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106648000-106669800	Weak transcription	HSMM	muscle
4	chr4:106657000-106669800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:106657000-106669800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:106657000-106670000	Weak transcription	Gastric	stomach
7	chr4:106657000-106670200	Weak transcription	Ovary	ovary
8	chr4:106659000-106669800	Weak transcription	Dnd41	blood
9	chr4:106659200-106669800	Weak transcription	Left Ventricle	heart
10	chr4:106659400-106679400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:106659400-106686400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:106659600-106670000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:106659600-106671000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:106659600-106691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:106659800-106669600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:106659800-106671800	Weak transcription	Fetal Brain Female	brain
17	chr4:106660000-106670200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:106660200-106670000	Weak transcription	Adipose Nuclei	Adipose
19	chr4:106660200-106671200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:106660800-106669800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:106661400-106669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:106661400-106670200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:106661400-106676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:106661400-106686600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:106661400-106686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr4:106661600-106669800	Weak transcription	Fetal Muscle Leg	muscle
27	chr4:106661600-106696800	Weak transcription	Fetal Intestine Small	intestine
28	chr4:106661800-106675800	Weak transcription	Primary B cells from cord blood	blood
29	chr4:106662000-106670200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:106663800-106688600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:106666400-106671400	Weak transcription	HMEC	breast
32	chr4:106666600-106673000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:106668400-106673000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:106668600-106679800	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:106669400-106671000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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