Variant report

Variant	rs61738774
Chromosome Location	chr6:30136150-30136151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30136149-30136199	GM12892	blood:	n/a
2	chr6:30136149-30136199	HRCEpiC	kidney:	n/a
3	chr6:30136149-30136199	AG04449	skin:	fetal
4	chr6:30136149-30136199	BE2_C	brain:	n/a
5	chr6:30136149-30136199	AG09309	skin:	n/a
6	chr6:30136149-30136199	Jurkat	blood:	n/a
7	chr6:30136149-30136199	MCF-7	breast:	n/a
8	chr6:30136149-30136199	IMR90	lung:	fetal
9	chr6:30136149-30136199	HNPCEpiC	eye:	n/a
10	chr6:30136149-30136199	HPAEpiC	pulmonary alveolar:	n/a
11	chr6:30136149-30136199	HUVEC	blood vessel:	n/a
12	chr6:30136149-30136199	NB4	blood:	n/a
13	chr6:30136149-30136199	HRE	kidney:	n/a
14	chr6:30136149-30136199	SK-N-SH_RA	brain:	n/a
15	chr6:30136149-30136199	HCM	heart:	n/a
16	chr6:30136149-30136199	GM12891	blood:	n/a
17	chr6:30136149-30136199	A549	lung:	n/a
18	chr6:30136149-30136199	U87	brain:	n/a
19	chr6:30136149-30136199	HMEC	breast:	n/a
20	chr6:30136149-30136199	Hepatocyte	liver:	n/a
21	chr6:30136149-30136199	Caco-2	colon:	n/a
22	chr6:30136149-30136199	SK-N-MC	brain:	n/a
23	chr6:30136149-30136199	T-47D	breast:	n/a
24	chr6:30136149-30136199	CMK	blood:	n/a
25	chr6:30136149-30136199	BJ	skin:	n/a
26	chr6:30136149-30136199	ovcar-3	ovarian:	n/a
27	chr6:30136149-30136199	ProgFib	skin:	n/a
28	chr6:30136149-30136199	Hela-S3	cervix:	n/a
29	chr6:30136149-30136199	NT2-D1	testis:	n/a
30	chr6:30136149-30136199	SK-N-SH	brain:	n/a
31	chr6:30136149-30136199	GM06990	blood:	n/a
32	chr6:30136149-30136199	HEK293	kidney:	embryo
33	chr6:30136149-30136199	AoSMC	blood vessel:	n/a
34	chr6:30136149-30136199	SKMC	muscle:	n/a
35	chr6:30136149-30136199	GM12878	blood:	n/a
36	chr6:30136149-30136199	NHBE	bronchial:	n/a
37	chr6:30136149-30136199	AG09319	gingival:	n/a
38	chr6:30136149-30136199	PANC-1	pancreas:	n/a
39	chr6:30136149-30136199	HepG2	liver:	n/a
40	chr6:30136149-30136199	HEEpiC	esophagus:	n/a
41	chr6:30136149-30136199	HAEpiC	amniotic membrane:	n/a
42	chr6:30136149-30136199	NHDF-neo	bronchial:	n/a
43	chr6:30136149-30136199	AG04450	lung:	fetal
44	chr6:30136149-30136199	K562	blood:	n/a
45	chr6:30136149-30136199	ECC-1	luminal epithelium:	n/a
46	chr6:30136149-30136199	H1-hESC	embryonic stem cell:	embryo
47	chr6:30136149-30136199	HCPEpiC	choroid plexus:	n/a
48	chr6:30136149-30136199	PrEC	prostate:	n/a
49	chr6:30136149-30136199	HCT-116	colon:	n/a
50	chr6:30136149-30136199	MCF10A-Er-Src	breast:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30127758..30130615-chr6:30135691..30137598,2	K562	blood:
2	chr6:30134299..30136514-chr6:30137950..30139841,2	MCF-7	breast:
3	chr6:30127588..30130090-chr6:30135576..30138983,3	K562	blood:

No data

Variant related genes	Relation type
TRIM15	CpG island
ENSG00000204610	Chromatin interaction
ENSG00000204613	Chromatin interaction

rs_ID	r²[population]
rs2523980	1.00[EUR][1000 genomes]
rs61758092	1.00[EUR][1000 genomes]

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30132800-30136200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:30134600-30139600	Strong transcription	Duodenum Mucosa	Duodenum
3	chr6:30134800-30137000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:30134800-30137400	Strong transcription	Fetal Intestine Large	intestine
5	chr6:30134800-30137400	Strong transcription	Fetal Intestine Small	intestine
6	chr6:30134800-30137600	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr6:30134800-30137800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:30134800-30139600	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr6:30135000-30137200	Strong transcription	Colonic Mucosa	Colon
10	chr6:30135000-30137800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:30135000-30139000	Strong transcription	Liver	Liver
12	chr6:30135400-30137400	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:30135600-30136400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:30135600-30141200	Strong transcription	HepG2	liver

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