Variant report

Variant	rs61758092
Chromosome Location	chr6:30080565-30080566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2248752	0.89[AFR][1000 genomes]
rs2523980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61738774	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30078200-30080600	Active TSS	Stomach Mucosa	stomach
2	chr6:30078400-30081400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:30079200-30081000	Active TSS	Colonic Mucosa	Colon
4	chr6:30079400-30080600	Flanking Active TSS	Hela-S3	cervix
5	chr6:30080000-30080600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
6	chr6:30080000-30080600	Enhancers	Gastric	stomach
7	chr6:30080000-30080600	Active TSS	Rectal Smooth Muscle	rectum
8	chr6:30080000-30080800	Flanking Active TSS	Fetal Intestine Large	intestine
9	chr6:30080000-30081200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
10	chr6:30080000-30081800	Enhancers	Liver	Liver
11	chr6:30080200-30080600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr6:30080200-30080600	Enhancers	GM12878-XiMat	blood
13	chr6:30080200-30082400	Enhancers	HepG2	liver
14	chr6:30080400-30080600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
15	chr6:30080400-30080600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:30080400-30080600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:30080400-30080800	Flanking Active TSS	Fetal Intestine Small	intestine
18	chr6:30080400-30080800	Flanking Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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