Variant report

Variant	rs61739502
Chromosome Location	chr22:28410313-28410314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28400747..28403073-chr22:28409689..28411221,2	K562	blood:
2	chr22:28392464..28394711-chr22:28410219..28411871,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235954	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10483144	0.86[AFR][1000 genomes]
rs16985901	0.93[AFR][1000 genomes]
rs16985904	1.00[AFR][1000 genomes]
rs16985919	0.86[AFR][1000 genomes]
rs16985921	0.86[AFR][1000 genomes]
rs16985986	0.92[AFR][1000 genomes]
rs16986023	0.82[AFR][1000 genomes]
rs16986030	0.82[AFR][1000 genomes]
rs16986041	0.89[AFR][1000 genomes]
rs16986116	0.89[AFR][1000 genomes]
rs2092498	0.82[AFR][1000 genomes]
rs58534561	1.00[AFR][1000 genomes]
rs61317772	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28381800-28412400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr22:28386200-28416000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr22:28389200-28413000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:28390000-28414600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr22:28390400-28416200	Weak transcription	Colonic Mucosa	Colon
6	chr22:28394800-28414000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr22:28395000-28416400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr22:28395600-28413000	Weak transcription	Pancreas	Pancrea
9	chr22:28396000-28422400	Weak transcription	Primary T cells from cord blood	blood
10	chr22:28397200-28423000	Weak transcription	HepG2	liver
11	chr22:28397400-28412000	Weak transcription	Placenta	Placenta
12	chr22:28399400-28425800	Weak transcription	Liver	Liver
13	chr22:28401600-28412000	Weak transcription	Thymus	Thymus
14	chr22:28401800-28410400	Weak transcription	Fetal Thymus	thymus
15	chr22:28405200-28414000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr22:28405400-28412400	Weak transcription	Brain Hippocampus Middle	brain
17	chr22:28405400-28415000	Weak transcription	HSMM	muscle
18	chr22:28405400-28416200	Weak transcription	NHDF-Ad	bronchial
19	chr22:28405400-28416200	Weak transcription	NHLF	lung
20	chr22:28405400-28416400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr22:28405400-28416400	Weak transcription	Fetal Kidney	kidney
22	chr22:28405600-28412400	Weak transcription	Brain Anterior Caudate	brain
23	chr22:28405600-28414800	Weak transcription	HSMMtube	muscle
24	chr22:28405800-28411400	Strong transcription	Fetal Intestine Small	intestine
25	chr22:28405800-28414000	Weak transcription	Psoas Muscle	Psoas
26	chr22:28405800-28416000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr22:28405800-28416200	Weak transcription	Left Ventricle	heart
28	chr22:28406200-28410800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr22:28406200-28411200	Strong transcription	Fetal Stomach	stomach
30	chr22:28406600-28410600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr22:28406800-28411000	Strong transcription	Ovary	ovary
32	chr22:28406800-28411800	Weak transcription	Fetal Heart	heart
33	chr22:28407400-28410400	Strong transcription	Aorta	Aorta
34	chr22:28407600-28410800	Strong transcription	Adipose Nuclei	Adipose
35	chr22:28407600-28411000	Strong transcription	Fetal Intestine Large	intestine
36	chr22:28407600-28411800	Strong transcription	Dnd41	blood
37	chr22:28407800-28410400	Strong transcription	Lung	lung
38	chr22:28408000-28410400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr22:28408000-28411000	Strong transcription	Right Ventricle	heart
40	chr22:28408000-28412600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr22:28408200-28410400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr22:28408200-28410400	Strong transcription	Fetal Lung	lung
43	chr22:28408600-28411800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr22:28408800-28410400	Strong transcription	Brain Angular Gyrus	brain
45	chr22:28408800-28416200	Genic enhancers	Fetal Muscle Trunk	muscle
46	chr22:28409000-28410400	Genic enhancers	Spleen	Spleen
47	chr22:28409000-28428000	Genic enhancers	Fetal Muscle Leg	muscle
48	chr22:28409200-28411200	Enhancers	Esophagus	oesophagus
49	chr22:28409200-28412600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr22:28409200-28416200	Weak transcription	Placenta Amnion	Placenta Amnion

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