Variant report

Variant	rs16986116
Chromosome Location	chr22:28583578-28583579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10483144	0.89[AFR][1000 genomes]
rs16985901	0.82[AFR][1000 genomes]
rs16985904	0.89[AFR][1000 genomes]
rs16985919	0.89[AFR][1000 genomes]
rs16985921	0.89[AFR][1000 genomes]
rs16985986	0.96[AFR][1000 genomes]
rs16986023	0.93[AFR][1000 genomes]
rs16986030	0.93[AFR][1000 genomes]
rs16986041	1.00[AFR][1000 genomes]
rs16986128	0.86[AFR][1000 genomes]
rs16986168	0.80[AFR][1000 genomes]
rs16986172	0.80[AFR][1000 genomes]
rs16986181	0.80[AFR][1000 genomes]
rs16986193	0.86[AFR][1000 genomes]
rs16986219	0.86[AFR][1000 genomes]
rs16986231	0.86[AFR][1000 genomes]
rs16986238	0.80[AFR][1000 genomes]
rs16986246	0.86[AFR][1000 genomes]
rs16986249	0.86[AFR][1000 genomes]
rs16986259	0.86[AFR][1000 genomes]
rs16986349	0.86[AFR][1000 genomes]
rs2092498	0.93[AFR][1000 genomes]
rs2103601	0.86[AFR][1000 genomes]
rs58534561	0.89[AFR][1000 genomes]
rs58713460	0.86[AFR][1000 genomes]
rs60811750	0.86[AFR][1000 genomes]
rs61317772	1.00[AFR][1000 genomes]
rs61739502	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28572200-28597800	Weak transcription	Dnd41	blood
2	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
3	chr22:28577400-28584600	Weak transcription	Fetal Brain Female	brain
4	chr22:28577800-28600400	Weak transcription	Right Atrium	heart
5	chr22:28578400-28583600	Weak transcription	Fetal Muscle Leg	muscle
6	chr22:28578400-28583800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr22:28579600-28584600	Weak transcription	Psoas Muscle	Psoas
8	chr22:28579600-28587400	Weak transcription	Lung	lung
9	chr22:28580200-28583600	Weak transcription	Fetal Lung	lung
10	chr22:28580400-28583800	Weak transcription	Brain Germinal Matrix	brain
11	chr22:28582600-28583600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr22:28582800-28585000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr22:28582800-28585000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr22:28583000-28585000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr22:28583200-28584200	Enhancers	Fetal Brain Male	brain
16	chr22:28583200-28584600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr22:28583200-28585000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr22:28583400-28584000	Enhancers	Fetal Heart	heart
19	chr22:28583400-28584600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr22:28583400-28584600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr22:28583400-28585000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr22:28583400-28585000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr22:28583400-28585400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links