Variant report

Variant	rs16986128
Chromosome Location	chr22:28601647-28601648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10483144	0.90[AFR][1000 genomes]
rs16985901	0.83[AFR][1000 genomes]
rs16985919	0.90[AFR][1000 genomes]
rs16985921	0.90[AFR][1000 genomes]
rs16985986	0.82[AFR][1000 genomes]
rs16986023	0.93[AFR][1000 genomes]
rs16986030	0.93[AFR][1000 genomes]
rs16986041	0.86[AFR][1000 genomes]
rs16986116	0.86[AFR][1000 genomes]
rs16986168	0.93[AFR][1000 genomes]
rs16986172	0.93[AFR][1000 genomes]
rs16986181	0.93[AFR][1000 genomes]
rs16986193	1.00[AFR][1000 genomes]
rs16986219	1.00[AFR][1000 genomes]
rs16986231	1.00[AFR][1000 genomes]
rs16986238	0.93[AFR][1000 genomes]
rs16986240	0.90[AFR][1000 genomes]
rs16986246	1.00[AFR][1000 genomes]
rs16986249	1.00[AFR][1000 genomes]
rs16986259	1.00[AFR][1000 genomes]
rs16986349	1.00[AFR][1000 genomes]
rs2092498	0.93[AFR][1000 genomes]
rs2103601	1.00[AFR][1000 genomes]
rs57301669	0.93[AFR][1000 genomes]
rs58713460	1.00[AFR][1000 genomes]
rs60811750	1.00[AFR][1000 genomes]
rs61317772	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv962867	chr22:28595811-28611386	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
2	chr22:28600200-28601800	Enhancers	Brain Germinal Matrix	brain
3	chr22:28600200-28616400	Weak transcription	Ovary	ovary
4	chr22:28600400-28603000	Weak transcription	Colon Smooth Muscle	Colon
5	chr22:28600600-28602400	Weak transcription	HUVEC	blood vessel
6	chr22:28600600-28602800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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