Variant report

Variant	rs60811750
Chromosome Location	chr22:28752013-28752014
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10483144	0.90[AFR][1000 genomes]
rs16985986	0.82[AFR][1000 genomes]
rs16986023	0.93[AFR][1000 genomes]
rs16986030	0.93[AFR][1000 genomes]
rs16986041	0.86[AFR][1000 genomes]
rs16986116	0.86[AFR][1000 genomes]
rs16986128	1.00[AFR][1000 genomes]
rs16986168	0.93[AFR][1000 genomes]
rs16986172	0.93[AFR][1000 genomes]
rs16986181	0.93[AFR][1000 genomes]
rs16986193	1.00[AFR][1000 genomes]
rs16986219	1.00[AFR][1000 genomes]
rs16986231	1.00[AFR][1000 genomes]
rs16986238	0.93[AFR][1000 genomes]
rs16986240	0.90[AFR][1000 genomes]
rs16986246	1.00[AFR][1000 genomes]
rs16986249	1.00[AFR][1000 genomes]
rs16986259	1.00[AFR][1000 genomes]
rs16986349	1.00[AFR][1000 genomes]
rs2092498	0.93[AFR][1000 genomes]
rs2103601	1.00[AFR][1000 genomes]
rs57301669	0.93[AFR][1000 genomes]
rs58713460	1.00[AFR][1000 genomes]
rs61317772	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28741600-28753200	Weak transcription	Brain Germinal Matrix	brain
2	chr22:28741600-28759000	Weak transcription	Fetal Stomach	stomach
3	chr22:28742800-28759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr22:28743000-28759000	Weak transcription	Dnd41	blood
5	chr22:28745200-28754400	Weak transcription	Brain Anterior Caudate	brain
6	chr22:28746200-28754200	Weak transcription	Fetal Heart	heart
7	chr22:28748000-28755800	Weak transcription	Fetal Intestine Small	intestine
8	chr22:28748000-28759600	Weak transcription	Fetal Lung	lung
9	chr22:28748200-28754200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr22:28748800-28754200	Weak transcription	Fetal Brain Male	brain
11	chr22:28751200-28752600	Weak transcription	Right Ventricle	heart
12	chr22:28751600-28752200	Enhancers	Left Ventricle	heart
13	chr22:28751600-28752400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr22:28751600-28752800	Enhancers	Fetal Brain Female	brain
15	chr22:28751600-28752800	Enhancers	Ovary	ovary
16	chr22:28752000-28754400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links