Variant report

Variant	rs61740349
Chromosome Location	chr6:27463822-27463823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27463676..27464183-chr6:27577279..27577923,2	K562	blood:
2	chr6:27444179..27448029-chr6:27462358..27468433,6	K562	blood:
3	chr6:27462160..27465243-chr6:27483150..27486620,3	K562	blood:
4	chr6:27262330..27264270-chr6:27461597..27464387,2	K562	blood:
5	chr6:27447854..27450536-chr6:27461434..27464293,2	K562	blood:
6	chr6:27457396..27459337-chr6:27460675..27465171,4	K562	blood:
7	chr6:27124395..27126679-chr6:27463309..27464874,2	K562	blood:
8	chr6:27461978..27464683-chr6:27744618..27746788,2	K562	blood:

No data

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs16899633	1.00[EUR][1000 genomes]
rs16899664	1.00[EUR][1000 genomes]
rs16899778	1.00[EUR][1000 genomes]
rs16899794	1.00[EUR][1000 genomes]
rs16899861	1.00[EUR][1000 genomes]
rs4616979	1.00[EUR][1000 genomes]
rs56141585	1.00[EUR][1000 genomes]
rs56773753	1.00[EUR][1000 genomes]
rs56980568	1.00[EUR][1000 genomes]
rs56982870	1.00[EUR][1000 genomes]
rs57123722	1.00[EUR][1000 genomes]
rs57349601	1.00[EUR][1000 genomes]
rs57509377	1.00[EUR][1000 genomes]
rs58458505	1.00[EUR][1000 genomes]
rs58669069	1.00[EUR][1000 genomes]
rs58685987	1.00[EUR][1000 genomes]
rs58942357	1.00[EUR][1000 genomes]
rs59659183	1.00[EUR][1000 genomes]
rs59813908	1.00[EUR][1000 genomes]
rs59886985	1.00[EUR][1000 genomes]
rs61137579	1.00[EUR][1000 genomes]
rs61206558	1.00[EUR][1000 genomes]
rs61482673	1.00[EUR][1000 genomes]
rs61483696	1.00[EUR][1000 genomes]
rs73738743	1.00[EUR][1000 genomes]
rs73738764	1.00[EUR][1000 genomes]
rs73738772	1.00[EUR][1000 genomes]
rs73738775	1.00[EUR][1000 genomes]
rs73738795	1.00[EUR][1000 genomes]
rs73738796	1.00[EUR][1000 genomes]
rs73738798	1.00[EUR][1000 genomes]
rs73738799	1.00[EUR][1000 genomes]
rs73738802	1.00[EUR][1000 genomes]
rs73739106	1.00[EUR][1000 genomes]
rs73741704	1.00[EUR][1000 genomes]
rs73741705	1.00[EUR][1000 genomes]
rs73741706	1.00[EUR][1000 genomes]
rs73741716	1.00[EUR][1000 genomes]
rs766093	1.00[EUR][1000 genomes]
rs7744655	1.00[EUR][1000 genomes]
rs7750919	1.00[EUR][1000 genomes]
rs7751102	1.00[EUR][1000 genomes]
rs7758568	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765353	1.00[EUR][1000 genomes]
rs7768826	1.00[EUR][1000 genomes]
rs7773166	1.00[EUR][1000 genomes]
rs7775305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv462665	chr6:27458013-27547792	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv601203	chr6:27458013-27547792	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27462400-27464200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:27462600-27464000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:27462600-27464000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:27462600-27464000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:27462600-27464000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:27462600-27464000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:27462600-27464000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:27462600-27464000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:27462600-27464000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:27462600-27464000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:27462600-27464000	Active TSS	NHDF-Ad	bronchial
12	chr6:27462600-27464000	Active TSS	NHLF	lung
13	chr6:27462600-27464000	Active TSS	Osteobl	bone
14	chr6:27462600-27464200	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:27462600-27464200	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:27462600-27464200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:27462600-27464200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:27462800-27464000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:27462800-27464000	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr6:27462800-27464000	ZNF genes & repeats	Liver	Liver
21	chr6:27462800-27464200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr6:27462800-27464600	Active TSS	A549	lung
23	chr6:27463000-27464000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:27463000-27464000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:27463000-27464000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:27463000-27464000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:27463000-27464000	Bivalent/Poised TSS	HepG2	liver
28	chr6:27463000-27464000	Active TSS	NHEK	skin
29	chr6:27463000-27464200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:27463000-27464200	Active TSS	K562	blood
31	chr6:27463200-27464000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
32	chr6:27463200-27464200	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr6:27463200-27464200	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr6:27463200-27464200	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr6:27463200-27464200	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr6:27463200-27464200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:27463400-27464000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:27463400-27464000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr6:27463400-27464000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
40	chr6:27463400-27464000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:27463600-27464000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:27463600-27464000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:27463600-27464000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
44	chr6:27463600-27464000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
45	chr6:27463600-27464000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
46	chr6:27463600-27464000	Bivalent Enhancer	Colon Smooth Muscle	Colon
47	chr6:27463600-27464000	Bivalent Enhancer	Fetal Intestine Small	intestine
48	chr6:27463600-27464000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr6:27463600-27464000	Flanking Active TSS	GM12878-XiMat	blood
50	chr6:27463800-27464000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood

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