Variant report

Variant	rs4616979
Chromosome Location	chr6:27503076-27503077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27495180..27505101-chr6:27505644..27514408,17	K562	blood:
2	chr6:27498929..27501646-chr6:27502336..27504422,2	K562	blood:
3	chr6:27143921..27146331-chr6:27500978..27503317,2	K562	blood:
4	chr6:27496603..27498209-chr6:27501175..27503204,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12111051	0.82[AFR][1000 genomes]
rs16899633	1.00[EUR][1000 genomes]
rs16899664	1.00[EUR][1000 genomes]
rs16899778	1.00[EUR][1000 genomes]
rs16899794	1.00[EUR][1000 genomes]
rs16899861	1.00[EUR][1000 genomes]
rs56141585	1.00[EUR][1000 genomes]
rs56773753	1.00[EUR][1000 genomes]
rs56980568	1.00[EUR][1000 genomes]
rs56982870	1.00[EUR][1000 genomes]
rs57123722	1.00[EUR][1000 genomes]
rs57349601	1.00[EUR][1000 genomes]
rs57509377	1.00[EUR][1000 genomes]
rs58458505	1.00[EUR][1000 genomes]
rs58669069	1.00[EUR][1000 genomes]
rs58685987	1.00[EUR][1000 genomes]
rs58942357	1.00[EUR][1000 genomes]
rs59659183	1.00[EUR][1000 genomes]
rs59813908	1.00[EUR][1000 genomes]
rs61137579	1.00[EUR][1000 genomes]
rs61206558	1.00[EUR][1000 genomes]
rs61482673	1.00[EUR][1000 genomes]
rs61483696	1.00[EUR][1000 genomes]
rs61740349	1.00[EUR][1000 genomes]
rs6904596	0.84[AFR][1000 genomes]
rs73395377	1.00[AMR][1000 genomes]
rs73395381	1.00[AMR][1000 genomes]
rs73395396	1.00[AMR][1000 genomes]
rs73738764	1.00[EUR][1000 genomes]
rs73738772	1.00[EUR][1000 genomes]
rs73738775	1.00[EUR][1000 genomes]
rs73738795	1.00[EUR][1000 genomes]
rs73738796	1.00[EUR][1000 genomes]
rs73738798	1.00[EUR][1000 genomes]
rs73738799	1.00[EUR][1000 genomes]
rs73738802	1.00[EUR][1000 genomes]
rs73739106	1.00[EUR][1000 genomes]
rs73741704	1.00[EUR][1000 genomes]
rs73741705	1.00[EUR][1000 genomes]
rs73741706	1.00[EUR][1000 genomes]
rs73741716	1.00[EUR][1000 genomes]
rs766093	1.00[EUR][1000 genomes]
rs7744655	1.00[EUR][1000 genomes]
rs7750919	1.00[EUR][1000 genomes]
rs7751102	1.00[EUR][1000 genomes]
rs7758568	1.00[EUR][1000 genomes]
rs7765353	1.00[EUR][1000 genomes]
rs7768826	1.00[EUR][1000 genomes]
rs7773166	1.00[EUR][1000 genomes]
rs7775305	1.00[EUR][1000 genomes]
rs9468147	1.00[AMR][1000 genomes]
rs9468160	0.88[AFR][1000 genomes]
rs9468189	0.82[AFR][1000 genomes]
rs9468190	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv462665	chr6:27458013-27547792	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv601203	chr6:27458013-27547792	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1025572	chr6:27487852-27604454	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv538167	chr6:27487852-27604454	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv883509	chr6:27492906-27586181	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27500800-27506200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:27501200-27506400	Weak transcription	A549	lung
3	chr6:27501200-27506400	Weak transcription	NHEK	skin
4	chr6:27501400-27511600	Weak transcription	HMEC	breast
5	chr6:27501800-27508600	Weak transcription	K562	blood

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