Variant report

Variant	rs73395377
Chromosome Location	chr6:27468046-27468047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4616979	1.00[AMR][1000 genomes]
rs73395381	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73395396	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468147	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv462665	chr6:27458013-27547792	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv601203	chr6:27458013-27547792	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27463800-27470200	Weak transcription	Right Atrium	heart
2	chr6:27464000-27468200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:27464000-27469200	Weak transcription	Hela-S3	cervix
4	chr6:27464000-27469400	Weak transcription	HMEC	breast
5	chr6:27464000-27469800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:27464200-27468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:27464200-27468200	Weak transcription	K562	blood
8	chr6:27466200-27470200	Weak transcription	Pancreas	Pancrea
9	chr6:27467800-27468600	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:27467800-27468600	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:27467800-27468600	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:27467800-27472000	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr6:27468000-27468600	Active TSS	H1 Cell Line	embryonic stem cell
14	chr6:27468000-27468600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr6:27468000-27468600	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:27468000-27468600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:27468000-27468600	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links