Variant report

Variant	rs61741711
Chromosome Location	chr1:158450192-158450193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1491193	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1491194	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41273489	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61005501	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6656837	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73012105	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7515435	0.82[EUR][1000 genomes]
rs7529179	0.96[EUR][1000 genomes]
rs7555075	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7555088	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158444200-158456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:158449600-158451200	Genic enhancers	Thymus	Thymus
3	chr1:158449600-158451200	Genic enhancers	Dnd41	blood
4	chr1:158450000-158451400	Genic enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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