Variant report

Variant	rs7555075
Chromosome Location	chr1:158487339-158487340
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1491193	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1491194	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41273489	0.90[EUR][1000 genomes]
rs61005501	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61741711	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6656837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73012105	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7515435	0.86[EUR][1000 genomes]
rs7529179	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7555088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001046	chr1:158461563-158503338	Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv437202	chr1:158484378-158493154	Weak transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3527983	chr1:158487228-158489826	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158486800-158487800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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