Variant report

Variant	rs61743101
Chromosome Location	chr9:99538346-99538347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:99526965..99528990-chr9:99536257..99538743,3	K562	blood:
2	chr9:99526965..99531480-chr9:99535657..99539148,5	K562	blood:
3	chr17:57921302..57923729-chr9:99538001..99540030,3	MCF-7	breast:
4	chr5:35598976..35599731-chr9:99537888..99538531,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59141120	1.00[AMR][1000 genomes]
rs7861215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430084	chr9:99383945-99551945	Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv831660	chr9:99485058-99672080	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99513600-99538800	ZNF genes & repeats	Liver	Liver
2	chr9:99515400-99538400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr9:99518400-99538800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:99520200-99538800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr9:99520800-99538800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:99526000-99538600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:99527200-99538400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:99529600-99538600	Strong transcription	Placenta	Placenta
9	chr9:99529600-99539400	Weak transcription	Pancreas	Pancrea
10	chr9:99529800-99538600	Strong transcription	Osteobl	bone
11	chr9:99530400-99538600	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr9:99531400-99538800	Strong transcription	Stomach Smooth Muscle	stomach
13	chr9:99531800-99539400	Weak transcription	Aorta	Aorta
14	chr9:99532400-99539200	Weak transcription	HepG2	liver
15	chr9:99532600-99539200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:99532600-99539400	Weak transcription	Psoas Muscle	Psoas
17	chr9:99532600-99539800	Weak transcription	Small Intestine	intestine
18	chr9:99532800-99539400	Weak transcription	Colonic Mucosa	Colon
19	chr9:99533000-99538600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:99533000-99538600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:99533400-99538600	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:99533400-99538600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:99533400-99538600	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:99533400-99538600	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr9:99533400-99538600	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:99533400-99538600	Strong transcription	NHDF-Ad	bronchial
27	chr9:99533400-99538800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:99533400-99539000	Weak transcription	Fetal Brain Male	brain
29	chr9:99533600-99538400	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr9:99533800-99538400	Strong transcription	Brain Hippocampus Middle	brain
31	chr9:99533800-99538600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:99533800-99538600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:99534000-99538600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:99534000-99539200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:99534400-99538400	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr9:99534400-99538400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:99534400-99538800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:99534400-99538800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr9:99534600-99538400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr9:99534600-99538400	Strong transcription	Fetal Brain Female	brain
41	chr9:99534600-99538600	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:99534600-99538600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr9:99534800-99538400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr9:99534800-99538600	Strong transcription	Brain Anterior Caudate	brain
45	chr9:99535000-99538400	Strong transcription	Brain Substantia Nigra	brain
46	chr9:99535000-99538400	Strong transcription	Colon Smooth Muscle	Colon
47	chr9:99535000-99538400	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr9:99535000-99538400	Strong transcription	HSMMtube	muscle
49	chr9:99535000-99538600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr9:99535000-99538600	Strong transcription	Brain Cingulate Gyrus	brain

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