Variant report

Variant	rs59141120
Chromosome Location	chr9:99758517-99758518
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3824483	0.84[ASN][1000 genomes]
rs57985290	0.88[ASN][1000 genomes]
rs61743101	1.00[AMR][1000 genomes]
rs73547512	0.83[ASN][1000 genomes]
rs73548327	0.88[ASN][1000 genomes]
rs73548329	0.88[ASN][1000 genomes]
rs73548347	0.88[ASN][1000 genomes]
rs7861215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831661	chr9:99611968-99800592	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893606	chr9:99659608-99795125	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv972789	chr9:99704335-99774677	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99739000-99762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:99744000-99774800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:99750600-99774800	Weak transcription	Fetal Stomach	stomach
4	chr9:99751200-99760200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr9:99751200-99762800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:99752800-99763400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:99752800-99764400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:99752800-99765800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:99752800-99765800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:99753400-99758600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:99753800-99759600	Weak transcription	GM12878-XiMat	blood
12	chr9:99753800-99764000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:99754000-99773600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:99754800-99762400	Weak transcription	K562	blood
15	chr9:99756600-99761400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:99756800-99761000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:99757800-99759600	Enhancers	NHEK	skin
18	chr9:99758400-99758600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:99758400-99758600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:99758400-99759800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:99758400-99760400	Enhancers	Primary B cells from peripheral blood	blood

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