Variant report

Variant	rs57985290
Chromosome Location	chr9:99790667-99790668
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99774361..99777166-chr9:99789167..99791934,2	K562	blood:

Variant related genes	Relation type
ENSG00000196312	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10119016	1.00[EUR][1000 genomes]
rs10122044	0.81[ASN][1000 genomes]
rs10123351	1.00[EUR][1000 genomes]
rs10980463	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28484691	1.00[EUR][1000 genomes]
rs28528697	1.00[EUR][1000 genomes]
rs28803929	1.00[EUR][1000 genomes]
rs3824483	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59141120	0.88[ASN][1000 genomes]
rs7034904	1.00[EUR][1000 genomes]
rs73539651	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73539658	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73539660	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73539663	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547510	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547512	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547537	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73547538	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73547543	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73547547	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73547563	1.00[EUR][1000 genomes]
rs73548347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831661	chr9:99611968-99800592	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893606	chr9:99659608-99795125	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99786400-99796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:99789000-99792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:99789000-99793000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:99789200-99791600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:99789400-99792000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:99789600-99792000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:99790200-99792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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