Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99814853..99816502-chr9:99820025..99822075,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10119016	1.00[EUR][1000 genomes]
rs10122044	0.84[ASN][1000 genomes]
rs10123351	1.00[EUR][1000 genomes]
rs10980463	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28484691	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28528697	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28803929	1.00[EUR][1000 genomes]
rs3824483	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57985290	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7034904	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73539651	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73539660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73539663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547512	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73547537	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73547538	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73547543	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73547547	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73547563	1.00[EUR][1000 genomes]
rs73548347	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99815200-99824400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:99818800-99821400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:99818800-99821400	Weak transcription	NHEK	skin
5	chr9:99819000-99821400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:99821000-99822200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:99821000-99823200	Enhancers	HMEC	breast

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