Variant report

Variant	rs10980463
Chromosome Location	chr9:99838887-99838888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10119016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10122044	1.00[ASN][1000 genomes]
rs10123351	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10759435	0.86[ASN][1000 genomes]
rs10980403	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980421	0.86[AFR][1000 genomes]
rs10980430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980433	0.86[AFR][1000 genomes]
rs10980435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340206	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2769139	1.00[JPT][hapmap]
rs28484691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28513814	1.00[AMR][1000 genomes]
rs28528697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28803929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824483	1.00[EUR][1000 genomes]
rs56190907	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57985290	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7034904	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73539651	1.00[EUR][1000 genomes]
rs73539658	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73539660	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73539663	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73547510	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73547512	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73548347	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73654646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7863880	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7867279	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99835400-99839400	Weak transcription	Fetal Heart	heart
2	chr9:99837800-99841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:99838200-99840000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:99838200-99840800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:99838400-99839600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr9:99838400-99839600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr9:99838400-99839800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr9:99838600-99839800	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr9:99838600-99839800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
10	chr9:99838600-99841200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:99838800-99839200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr9:99838800-99839200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:99838800-99839200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:99838800-99839400	Bivalent Enhancer	Fetal Brain Female	brain
15	chr9:99838800-99839400	Enhancers	Gastric	stomach
16	chr9:99838800-99839400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:99838800-99839400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
18	chr9:99838800-99839600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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