Variant report

Variant	rs10759435
Chromosome Location	chr9:99830726-99830727
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10122044	0.86[ASN][1000 genomes]
rs10980463	0.86[ASN][1000 genomes]
rs10980538	0.90[ASN][1000 genomes]
rs28484691	0.84[ASN][1000 genomes]
rs28528697	0.84[ASN][1000 genomes]
rs28803929	0.81[ASN][1000 genomes]
rs3802470	0.85[ASN][1000 genomes]
rs4361859	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4537412	0.88[ASN][1000 genomes]
rs4573386	0.81[ASN][1000 genomes]
rs6477855	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6477872	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6477874	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7034904	0.84[ASN][1000 genomes]
rs73547537	0.86[ASN][1000 genomes]
rs73547538	0.86[ASN][1000 genomes]
rs73547543	0.86[ASN][1000 genomes]
rs73547547	0.86[ASN][1000 genomes]
rs7848519	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7848718	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7849720	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7862725	0.91[EUR][1000 genomes]
rs7863880	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867279	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:99829200-99834400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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