Variant report

Variant	rs10122044
Chromosome Location	chr9:99839956-99839957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10119016	0.92[ASN][1000 genomes]
rs10759435	0.86[ASN][1000 genomes]
rs10980463	1.00[ASN][1000 genomes]
rs28484691	0.98[ASN][1000 genomes]
rs28528697	0.98[ASN][1000 genomes]
rs28803929	0.94[ASN][1000 genomes]
rs57985290	0.81[ASN][1000 genomes]
rs7034904	0.98[ASN][1000 genomes]
rs73539658	0.84[ASN][1000 genomes]
rs73539660	0.84[ASN][1000 genomes]
rs73539663	0.84[ASN][1000 genomes]
rs73547510	0.84[ASN][1000 genomes]
rs73547512	0.88[ASN][1000 genomes]
rs73547537	1.00[ASN][1000 genomes]
rs73547538	1.00[ASN][1000 genomes]
rs73547543	1.00[ASN][1000 genomes]
rs73547547	1.00[ASN][1000 genomes]
rs73547563	0.92[ASN][1000 genomes]
rs73548347	0.81[ASN][1000 genomes]
rs7863880	0.85[ASN][1000 genomes]
rs7867279	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99837800-99841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:99838200-99840000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:99838200-99840800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:99838600-99841200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:99839000-99840000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:99839200-99840000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
7	chr9:99839400-99840000	Enhancers	Fetal Heart	heart
8	chr9:99839400-99840600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:99839600-99840000	Bivalent Enhancer	Fetal Brain Female	brain
10	chr9:99839800-99840000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:99839800-99840000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:99839800-99840000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:99839800-99840000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:99839800-99840000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
15	chr9:99839800-99840000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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