Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99807016..99810374-chr9:99823217..99825198,3	MCF-7	breast:
2	chr9:99799772..99802135-chr9:99823407..99826313,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136943	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10119016	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10122044	0.88[ASN][1000 genomes]
rs10123351	1.00[EUR][1000 genomes]
rs10980463	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28484691	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28528697	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28803929	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3824483	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57985290	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59141120	0.83[ASN][1000 genomes]
rs7034904	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73539651	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73539658	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73539660	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73539663	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73547510	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73547537	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547538	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547543	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547547	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547563	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73548347	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:99823600-99825800	Enhancers	HMEC	breast
3	chr9:99823800-99825400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:99824200-99825400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:99824400-99825200	Enhancers	Stomach Mucosa	stomach
6	chr9:99824400-99825600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:99824400-99825600	Enhancers	Fetal Intestine Large	intestine
8	chr9:99824400-99825600	Enhancers	Fetal Intestine Small	intestine
9	chr9:99824600-99825400	Enhancers	NHEK	skin
10	chr9:99824600-99825600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:99824800-99825200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:99824800-99825200	Enhancers	HepG2	liver

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