Variant report

Variant	rs10123351
Chromosome Location	chr9:99819440-99819441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10119016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10980403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980421	0.86[AFR][1000 genomes]
rs10980430	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980433	0.86[AFR][1000 genomes]
rs10980435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980463	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10980464	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11999620	0.80[AFR][1000 genomes]
rs12338332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922567	0.80[AFR][1000 genomes]
rs28484691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513814	1.00[AMR][1000 genomes]
rs28528697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28803929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3824483	1.00[EUR][1000 genomes]
rs56190907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57985290	1.00[EUR][1000 genomes]
rs7034904	1.00[EUR][1000 genomes]
rs73539651	1.00[EUR][1000 genomes]
rs73539658	1.00[EUR][1000 genomes]
rs73539660	1.00[EUR][1000 genomes]
rs73539663	1.00[EUR][1000 genomes]
rs73547510	1.00[EUR][1000 genomes]
rs73547512	1.00[EUR][1000 genomes]
rs73547537	1.00[EUR][1000 genomes]
rs73547538	1.00[EUR][1000 genomes]
rs73547543	1.00[EUR][1000 genomes]
rs73547546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547547	1.00[EUR][1000 genomes]
rs73547563	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73548347	1.00[EUR][1000 genomes]
rs73654646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99815200-99824400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:99818600-99821000	Weak transcription	HMEC	breast
4	chr9:99818800-99821000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:99818800-99821400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:99818800-99821400	Weak transcription	NHEK	skin
7	chr9:99819000-99821400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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